BAC Information

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BAC

Clone NameMSMg01-289H20
Chromosome3 (Build37)
Map Location 6,110,556 - 6,110,871
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165
Downstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289H20.T7 (MSMg01no289_h20.b1)MSMg01-289H20.TJ (MSMg01no289_h20.g1)
ACCAG419026AG419027
length731734
length of high quality
(start - end)
320 (44 - 363)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no289_h20.b1 PHD_FILE: MSMg01no289_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:48 2005CHROMAT_FILE: MSMg01no289_h20.g1 PHD_FILE: MSMg01no289_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATAGGGACTGTTGTTGAATTCATAAGAATCATCCAGGAAGGATTCCT
TCCCTCCTTCTCCTTTTGAAGTACATATAGAAAACAGACACCATGCACTT
GGTATAAGCCTGTTACACTTGAAAGATTTGTTCTGAATGTCCAGTGGGAA
CCTGGAAATCGTAATAATTTGTAGTATCGATTGAGTGAAGCTATGCAGCT
GGGGCCTCCGGTGAATAGACAGAAATAGACATTTTATTGATTAACTTTTA
CAGTCATATTTCCAAGACTCTGCTGCAACATAATTTTCACTTCCCAGCTT
TGTGTTGTTGTATCTTTATACTTGCCCCCCTCCTCCCTTAACATTTACCC
ATGTGAGGGGAAAAAGCACCACCATGAATTGCCAAGGCTGTGTTCTGCAG
AAATGTGTAACTCTCTGAAAATTATTTCTCCCGAGTACTTCTCTCCCACA
AACTCTAGAAAGAAGCTCTTTTTAAAATAAATTATGATATCAGATGGTTG
GTAATTACATTTCTTCATATTTTGCTCATATTTCTCATATTTAAGAATTC
TAATTTTCTTACCTTAAATTTGTGCATGTACCCATCAAAATGAATTGTCT
GTTGCTAGCTTTGTTTATAGCCATGTGTACCTGACATCTTATTTATTACC
AAAAGCAGAGAAAAATTGTGATAATAGACTN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTAACTCTGTAACCCCATCTTCAATA
GGGTTATTTTTTTTCCTAGACTCCAATTTCTTGAGTGATATATATATATA
TATATATATATATATATATATATATATATATATATCCCCTATCAGATTTA
AGATTGGCAAAGATTTTTTTTCCCAATCTGTTGGTGGCGTTTTTGTATTA
TTGACAGTGTTCTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCA
TTTTTCAGTTCTTGATATATAGCAAACCAGTAGCCAATATCAAACTAAAT
GGAGAGAAACTGTTTTTTTATCTCACTCCCCCCCCCCACTAGACAAGGCT
GCCCAGTTTCTCCCTACACACCCCAATATAATACATGAATTCCTAGCCAG
AGCGATTAGACAACAAAAGGAGATCAAGGGGATACAATTTGGAAAGGAAG
AAGTCAAAATATCACTATTTGCAGATGATATGACCCTAAAAACTCCACTA
GAGAACTCCTAAAGCTGATAAACAACTTCCTCAAGTGGCTTGATATAAAA
TTAACAAATCGGTGGCTTCTGTCTACACAGAGGATAAACAGGCTGAGAAA
GAAATTAGGGAAACAACACCCTTCACAATAGTCACAAATAATATAAAATA
CCTTGGCATGACTCTAACTAAGGGAGTGAGAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_h20.b1 MSMg01no289_h20.b1 CHROMAT_FILE:
MSMg01no289_h20.b1 PHD_FILE: MSMg01no289_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:48 2005
         (320 letters)



>mm_chr3_6110352_6111071
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatagggactgttgttgaattcataagaatcatccaggaaggattccttccctcc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagggactgatgttgaattcataagaatcatccaggaaggattccttccctcc 264

                                                                       
Query: 65  ttctccttttgaagtacatatagaaaacagacaccatgcacttggtataagcctgttaca 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctccttttgaagtaaatatagaaaacagacaccatgcacttggtataagcctgttaca 324

                                                                       
Query: 125 cttgaaagatttgttctgaatgtccagtgggaacctggaaatcgtaataatttgtagtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgaaagatttgttctgaatgtccagtgggaacctggaaatcgtaataatttgtagtat 384

                                                                       
Query: 185 cgattgagtgaagctatgcagctggggcctccggtgaatagacagaaatagacattttat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgattgagtgaagctatgcagctggggcctccggtgaatagacagaaatagacattttat 444

                                                                       
Query: 245 tgattaacttttacagtcatatttccaagactctgctgcaacataattttcacttcccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgattaacttttacagtcatatttccaagactctgctgcaacataattttcacttcccag 504

                           
Query: 305 ctttgtgttgttgtat 320
           ||||||||||||||||
Sbjct: 505 ctttgtgttgttgtat 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)