BAC Information

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BAC

Clone NameMSMg01-289M06
Chromosome3 (Build37)
Map Location 76,430,486 - 76,430,769
singlet/doubletsinglet
Overlap geneFstl5
Upstream geneSerpini1, Golph4
Downstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289M06.T7 (MSMg01no289_m06.b1)MSMg01-289M06.TJ (MSMg01no289_m06.g1)
ACCAG419228AG419229
length748744
length of high quality
(start - end)
319 (45 - 363)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no289_m06.b1 PHD_FILE: MSMg01no289_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:08 2005CHROMAT_FILE: MSMg01no289_m06.g1 PHD_FILE: MSMg01no289_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGCCAGACTTTTGAACATGAGCAAATACCAATACTCCTCAAATTAT
TCTACAACATAGAAGCAGCAAGAGCACTGCCTAATTCAATTTATGATGCC
ACAGTTACCTTCATAACTAAACATTATCTGGATCTCATGGAGGCACTTCC
CCAAATGAATCTCCTTTCTTTGTGATAATTCCAGCCTGTGTCAAGTTGAC
ACACAAAACCAGCCAGTATAGTAATCTACCATATAAACAACCTGAAAGAA
AAAAAAAATCACATCTCATTAGTTGTTAAAAACTTTCGAAAAAAATTGTA
GGTCTTTCATGATTAAAGTATTACAGAGATCAGGAATATAAGGCACATAT
CTAAACATAATCCACCCCACATACAGCAAGGCTCATAGCTAACATCAAGC
TAAATGGAGAGAAACTTAAAGATAATTTCTTAAATGAGAAAATTGTATTT
GGAACTGACAAACCATAATCATGACATGATTTTAAAAGCACATAACTTTT
CGTTTTAAATTTTTATTTTAATCTTTTTATTAGCTTTTTCATTAAATGTT
ATGATTGTACCTAATGAATTTTAGATTCTCTTATTTAGATTCCCTTATTT
TTCTGCCTCATTTCCCATCCTTGTACTGTAAGGTACTACTTTTAACCCTT
CTAGTTTCATGTCTTTTATGTATGTGACCAATCACATTTAAATAAAAG
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGATAAATTGAAAGGCAAAATATTAT
TTGTTTGTTTGTTTTTTTAACCCCTCAATTCATCTATAAAGTCTAGAGTA
ATTCATCTAACTTTTAACAAGAAACATTGACTCTGAGTCAATTTGGTTAA
TTATCAGTCAAGTGTCTAGTTTTGCATTGATGGAGGGACAAAATAATTTC
CTAATTAATACAAGAATTTATCTATGGAACATAAGTCATATTTTATGTTT
TAAATCAGCCATTACTAAATATATTAGTCATGAGTTGTAGACAGGCAGAA
TTGTATTTTTCTATTTTCATTACCACGACCGAAATATAATTCAAAGATTA
ATTCTGACTTTTTTGCCCCTTATACATAAACATAGGATTATACATGAACT
TCATGTAATGGCTCATTTGGATGAAAATGATTCTAGATTATTTCAACAAT
GATCTGTTAATTATAGTTCCCCAGAATGTGGCATTAAGAGAAGATATTAC
TAAACATTAAAGAAATGACAAGACTTCCATAGCAGTCACATTTGTCACAA
AAAAATATCATAAGAAATAATGCACTACTTGTCAGCTTTTAGGTATATGT
ATAGCTGTGCATAGCAGAATATAAATTCCATATACATATAATAAGGCTTG
AAAAGTAGATTGCTATTTATACCAAAAATTTATTTGTATCAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_m06.g1 MSMg01no289_m06.g1 CHROMAT_FILE:
MSMg01no289_m06.g1 PHD_FILE: MSMg01no289_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:08 2005
         (288 letters)



>mm_chr3_76430286_76430969
          Length = 684

 Score =  491 bits (254), Expect = e-143
 Identities = 278/288 (96%), Gaps = 4/288 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgataaattgaaaggcaaaatattatttgtttgtttgtttttttaacccctcaattcat 60
           ||||||||||||||||||||||||||    |||||||||||||||||   ||||||||||
Sbjct: 484 ttgataaattgaaaggcaaaatatta----tttgtttgtttttttaagttctcaattcat 429

                                                                       
Query: 61  ctataaagtctagagtaattcatctaacttttaacaagaaacattgactctgagtcaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctataaagtctagagtaattcatctaacttttaacaagaaacattgactctgagtcaatt 369

                                                                       
Query: 121 tggttaattatcagtcaagtgtctagttttgcattgatggagggacaaaataatttccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tggttaattatcagtcaagtgtctagttttgcattgatggagggacaaaataatttccta 309

                                                                       
Query: 181 attaatacaagaatttatctatggaacataagtcatattttatgttttaaatcagccatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 attaatacaagaatttatctatggaacataagtcatattttatgttttaaatcagccatt 249

                                                           
Query: 241 actaaatatattagtcatgagttgtagacaggcagaattgtatttttc 288
           |||||||| |  ||||||||||||||||||||||||||||||||||||
Sbjct: 248 actaaatagaaaagtcatgagttgtagacaggcagaattgtatttttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 684
Length adjustment: 9
Effective length of query: 279
Effective length of database: 675
Effective search space:   188325
Effective search space used:   188325
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)