Query= MSMg01no290_a15.b1 MSMg01no290_a15.b1 CHROMAT_FILE:
MSMg01no290_a15.b1 PHD_FILE: MSMg01no290_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:28 2005
(682 letters)
>mm_chr3_142003428_142004509
Length = 1082
Score = 1237 bits (640), Expect = 0.0
Identities = 670/680 (98%)
Strand = Plus / Plus
Query: 1 caaaataagataggaggaaaagataagatgggaaacactgaccagtgtgtgtaacagtta 60
||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct: 201 caaaataagataggaggaaaagataagatgggaaacactaaccagtgtgtgcaatagtta 260
Query: 61 cagaatttcatgatactaaggagatggctttaaaaacactctctaagtggaccacaatag 120
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 261 cagaatttcatgatactaaggagatggctttaaaaacactctgtaagtgcaccacaatag 320
Query: 121 aaaaagcaatagatgaaggtcaattggcaggcatggcagaaaggccaggaactcaaggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaagcaatagatgaaggtcaattggcaggcatggcagaaaggccaggaactcaaggcc 380
Query: 181 tgtctactattgtcacgactcctgtgcctaactccagttccaaggcttctactgagtcag 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tgtctgctattgtcacgactcctgtgcctaactccagttccaaggcttctactgggtcag 440
Query: 241 agttgagtcagaactatgagggtgctccaacttttcctcaaggtgtaagtagaaaccaat 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttgagtcagaactaggagggtgctccaacttttcctcaaggtgtaagtagaaaccaat 500
Query: 301 gatgttggcaggagctgtttcttccaactccaaactgctctacatctatgaagactttaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgttggcaggagctgtttcttccaactccaaactgctctacatctatgaagactttaa 560
Query: 361 aattgaaagtggtcttgccttttcattcaactgaaaaccacttcataaaagagagcatta 420
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattgaaagtggccgtgccttttcattcaactgaaaaccacttcataaaagagagcatta 620
Query: 421 aagctgctttaactcattcaaaagtcctttcactgaggctgttgagtgaatgatgatgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagctgctttaactcattcaaaagtcctttcactgaggctgttgagtgaatgatgatgta 680
Query: 481 atgctgctactagaatattgtgtgagcttcaaagaaattaaaaattttcaaacagcttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgctgctactagaatattgtgtgagcttcaaagaaattaaaaattttcaaacagcttta 740
Query: 541 actccttgctactattacccacatgactaaaacttaaactactgtaaaacttcattccct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actccttgctactattacccacatgactaaaacttaaactactgtaaaacttcattccct 800
Query: 601 gtgaactatacttaatgtcaaaactgcttattgtatattttgaagaacaacatgaacttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtgaactatacttaatgtcaaaactgcttattgtatattttgaagaacaacatgaacttt 860
Query: 661 taggcaagaggcatcattta 680
||||||||||||||||||||
Sbjct: 861 taggcaagaggcatcattta 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_a15.g1 MSMg01no290_a15.g1 CHROMAT_FILE:
MSMg01no290_a15.g1 PHD_FILE: MSMg01no290_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:28 2005
(289 letters)
>mm_chr3_142159893_142160580
Length = 688
Score = 520 bits (269), Expect = e-152
Identities = 284/289 (98%), Gaps = 1/289 (0%)
Strand = Plus / Minus
Query: 1 acttcccgacaatgggagcgctgtgttagagccccagtctcagacctttcactgcgcagc 60
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 488 acttcccgacaatgggagcgctg-gttagagccccagtctcagaccttttactgcgcagc 430
Query: 61 tcatgctctgctatattgttcatgcaaatagtatggttgcctgctattctggaggcgatt 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 429 tcatgctctgctatattgttcatgcaaacagtatggttgcctgctattctggaggtgatt 370
Query: 121 ctgttctaaacagcaactagggatgccaagaagttaaaacaagcggagataaacagttgg 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 369 ctgttctaaacagcaactagggatgccaagaagttagaacaagcggagataaacagttgg 310
Query: 181 aagtcatttctacctttcagtttaatctcttcacactctgccctctcattaacaggaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aagtcatttctacctttcagtttaatctcttcacactctgccctctcattaacaggaaac 250
Query: 241 aataacggcactgaataaacactcggactgctggacaaggaattctgct 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aataacggcactgaataaacactcggactgctggacaaggaattctgct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space: 190120
Effective search space used: 190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
