Query= MSMg01no290_l08.b1 MSMg01no290_l08.b1 CHROMAT_FILE:
MSMg01no290_l08.b1 PHD_FILE: MSMg01no290_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:20 2005
(526 letters)
>mm_chr3_68121391_68122315
Length = 925
Score = 489 bits (253), Expect = e-142
Identities = 322/345 (93%), Gaps = 3/345 (0%)
Strand = Plus / Plus
Query: 7 gaattcaacaaggtatctcatttaaattaattttaactcatattattttacttcttttaa 66
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaacaaggtaact-atttaaattaattttaactcatattattttacttcttttaa 265
Query: 67 tgtgactagtagaaaatgctcagttgtgtatgtaggattttaaaatatatttatgtatac 126
|||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 266 tgtgactagtagaaaatgttcagttgtgtatgtagaattttaaaacatatttatgtatac 325
Query: 127 tgtattttttgtagtagttaaccacaaattttgtaagaaattgccataaactaaatggct 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtattttttgtagtagttaaccacaaattttgtaagaaattgccataaactaaatggct 385
Query: 187 taaaacaacacagattcacccttttatagtactggaagtcataccggaatctaagggaga 246
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 386 taaaacaacacagattcacccttttatagtactggaagtcataccagaatctaagggaga 445
Query: 247 cattttctttctttctttctttctttctttctttctttctttctttctttctttctttct 306
|||||||||||||||||||||||||||||||| ||| ||| ||| ||| ||| ||| |||
Sbjct: 446 cattttctttctttctttctttctttctttctctctctctctctctctctctctctctct 505
Query: 307 ttctttctttctttctttctttctttctttct-t-tctttctttc 349
||| ||| ||| ||| ||| ||| ||| ||| | ||||||||||
Sbjct: 506 ctctctctctctctctctctctctctctctctctctctttctttc 550
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 925
Length adjustment: 10
Effective length of query: 516
Effective length of database: 915
Effective search space: 472140
Effective search space used: 472140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_l08.g1 MSMg01no290_l08.g1 CHROMAT_FILE:
MSMg01no290_l08.g1 PHD_FILE: MSMg01no290_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:20 2005
(290 letters)
>mm_chr3_68292034_68292723
Length = 690
Score = 538 bits (278), Expect = e-157
Identities = 287/290 (98%)
Strand = Plus / Minus
Query: 1 catgcaagtcacacacaggacacagatgttctgctgtttcatcacctgtgcgtagctctg 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 490 catgcaagtcacacacaggacacagatgttctgctgtttcatcacctgtgtgtagctctg 431
Query: 61 gggatactgaaccgctctgtaggacgaagtgtcctagccgtagaacatctggatcttgtt 120
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 430 gggatactgaaccgctctgtaggacaaagtgtcctagacgtagaacatctggatcttgtt 371
Query: 121 tccagcccagtctctaaacaactttatgaccacaatttgcagatgaaagagggcggactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tccagcccagtctctaaacaactttatgaccacaatttgcagatgaaagagggcggactg 311
Query: 181 cctgttgaaggcatttggcaaatagtaggggttggtttaatgtctggaagaaaacaggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 cctgttgaaggcatttggcaaatagtaggggttggtttaatgtctggaagaaaacaggct 251
Query: 241 tcttccagtctagagaccctatggatttcatcctagaaaagatgggaaat 290
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcttccagtctagagaccctatggatttcatcctagaaaagatgggaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
