Query= MSMg01no291_k01.b1 MSMg01no291_k01.b1 CHROMAT_FILE:
MSMg01no291_k01.b1 PHD_FILE: MSMg01no291_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:28 2005
(697 letters)
>mm_chr3_13591899_13592996
Length = 1098
Score = 1326 bits (686), Expect = 0.0
Identities = 692/694 (99%), Gaps = 1/694 (0%)
Strand = Plus / Plus
Query: 5 gaattcattcaaagtactatgaacttagccaattgtttgtgacccttccagtcatattgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcaaagtactatgaacttagccaattgtttgtgacccttccagtcatattgt 264
Query: 65 actctattgtaaacacatagacccacagataattttaggtctcacatgttgtcaaacact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actctattgtaaacacatagacccacagataattttaggtctcacatgttgtcaaacact 324
Query: 125 aaatctaggtcctctttatttcagagctgtctcttcagccccgaatagttaattttttca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatctaggtcctctttatttcagagctgtctcttcagccccgaatagttaattttttca 384
Query: 185 aaggaaatttaataaaatctgtcaactgcaaagataaaagccaattttatctatgtaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggaaatttaataaaatctgtcaactgcaaagataaaagccaattttatctatgtaaaa 444
Query: 245 tatatcatttttaaattgagaatttcagtaacaaagtttaaaatctatatattcatcccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatatcatttttaaattgagaatttcagtaacaaagtttaaaatctatatattcatcccc 504
Query: 305 attattcaagtaaatccataaatttccaaaatatgcacaatatattcagcatttaatgtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attattcaagtaaatccataaatttccaaaatatgcacaatatattcagcatttaatgtt 564
Query: 365 ttgaaatattattgttcagtgaaatacttaaaatttggaacaattaatgaagtgcactaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgaaatattattgttcagtgaaatacttaaaatttggaacaattaatgaagtgcactaa 624
Query: 425 ccatacagctaggacactgaagggccacactgataactttgtatttcactgagagcaggg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccatacagctaggacactgaagggccacactgataactttgtatttcactgagagcaggg 684
Query: 485 attttctgtttaaggtttcacatgagagaattgatgccattttccataagggtctggcac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attttctgtttaaggtttcacatgagagaattgatgccattttccataagggtctggcac 744
Query: 545 attgtcactaaagcagtgattattgggaagtgactcttcctgttgattcaatggcttctc 604
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 745 attgtcactaaagcagtgattattgggaagtgtctcttcctgttgattcaatggcttctc 804
Query: 605 agtactcttgcttgttcttcttt-cttgagaacaaacttcacacagggctgccctattca 663
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 805 agtactcttgcttgttcttcttttcttgagaacaaacttcacacagggctgccctattca 864
Query: 664 aacatattcttcctccagactgtgtatttctccc 697
||||||||||||||||||||||||||||||||||
Sbjct: 865 aacatattcttcctccagactgtgtatttctccc 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1098
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1088
Effective search space: 747456
Effective search space used: 747456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no291_k01.g1 MSMg01no291_k01.g1 CHROMAT_FILE:
MSMg01no291_k01.g1 PHD_FILE: MSMg01no291_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:28 2005
(355 letters)
>mm_chr3_13749109_13749863
Length = 755
Score = 654 bits (338), Expect = 0.0
Identities = 353/362 (97%), Gaps = 7/362 (1%)
Strand = Plus / Minus
Query: 1 tatcttttctattttatccttaacacggtttctaattattttagaaataaaaactatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tatcttttctattttatccttaacacggtttctaattattttagaaataaaaactatttt 628
Query: 61 tatggttgccaatagttggcataatgttctttctaataagtcctctgttgctcatgtggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tatggttgccaatagttggcataatgttctttctaataagtcctctgttgctcatgtggg 568
Query: 121 aagag-------aaaaaaaaaaaagactgacttctgcattcaaagttcgagagactcaag 173
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aggagaaaaaaaaaaaaaaaaaaagactgacttctgcattcaaagttcgagagactcaag 508
Query: 174 acagctgagagttccatcgactataactagtgtaaacagacaatagcatttgggtatgat 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acagctgagagttccatcgactataactagtgtaaacagacaatagcatttgggtatgat 448
Query: 234 ttgggtaaagcgttcagatttccaggaagaacaaggtgtaaataggtgagagtaatttag 293
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 447 ttgggtaaagcgttcagatttccaggaagagcaaggtgtaaataggtgagagtaatttag 388
Query: 294 atgagcttactaaagggattatttttagaggtacgtggaatttatatcaccatggaagga 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atgagcttactaaagggattatttttagaggtacgtggaatttatatcaccatggaagga 328
Query: 354 ta 355
||
Sbjct: 327 ta 326
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space: 258116
Effective search space used: 258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
