BAC Information

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BAC

Clone NameMSMg01-291N06
Chromosome3 (Build37)
Map Location 70,536,613 - 70,536,900
singlet/doubletsinglet
Overlap genenone
Upstream geneNmd3, LOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868, LOC670542
Downstream geneEG625901, EG667377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291N06.T7 (MSMg01no291_n06.b1)MSMg01-291N06.TJ (MSMg01no291_n06.g1)
ACCAG420717AG420718
length724735
length of high quality
(start - end)
182 (130 - 311)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no291_n06.b1 PHD_FILE: MSMg01no291_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:43 2005CHROMAT_FILE: MSMg01no291_n06.g1 PHD_FILE: MSMg01no291_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCTTTCCGAGGGGGCGCGGAANTCCAGGC
CATTACGAAAAAAAAAGNAAGNTCCAGGACAGCCAGGGCTATAAAGAGAA
ACCCTGTCTTGAACANAAAAAACAGAAGCAAAATAAAACAAAACAAAACT
AAACAAAACAAAACAAAACAAACAAAAAAGAATAAAATGCTTCCCCAAAT
TCTAGGTATAATAGACTTTAACACACACACACACACACACACACACTTTT
TACACACACACACACACACACAATTGAGTAACATGAAACTTTGGGTTAAA
TCCTCAGCACCTTTTTTTTTTCCAAAAACAGCAAGAAAAGAGNAAGAANT
TTTTTTTTTATCCCCCCCCCCCCCCTACAATCCCATCATTTAAGAGGGTG
ATTCACCCCCCCCAAAGAAAAAAAATAAGCACCGTGGGGGGGGGCGAAAC
AGGACAAAATAATGAACAAAATATTACCTAACAAACTAAACACCACTTGT
GTAGTACATGTCCATTGCCCCAAACACATGGGCGATTGTGGATGATGAAT
CACAAACTTGAAAGCTTTCTGCCCCACTTGGTGAGTTTACAGCCAGCCTG
GACCACTGTCCCTCAATGTTATGCTTATCCGACTTTAACTGCTTTCTTTT
TGTTTTCCTTAGGTAAAACGTTATCCCTAAAATCACTCAACCATCGACTT
TCTGTTAGCTACAAAGACTTTGCT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGTGTGTTGCCCAAATTAAAGGGCAT
ATGTGGTTTGTGTTCTCTCAATGGCAATGGAAAAATGGGTTCATGACAAA
ACAGTATTAAGTTAGACATGATCTTCTGATGGGTTTGATGAGAATGTGAA
AGAAATAATTAAAGTGCAATTTCATGGTTATAAATAAAAATGACATAAAT
ATTACTGACATTTCTAACAGAAATTTGGAAGTCATAAGAAGCTGTTTTTT
TTTCTTTTTTTCTTTTTTTTAAAGGAAATTATGCCTTTTTTGAACTGGGC
ACCAAACCAAAAATTGATTTAATTTCCCCCCCCCCCCCTGACTCCTGAAA
ATGTTCTCTTGATATGTTCCCCCCCCAAAATAAAAAAGAGATATGTTGTT
TGGGATATGGTAGATATTTTGCAAAATGTTTATGACTTTTTCAAATTTAT
CTTCAAATATTTGCTTCAATAACTTTTCATTATGGATGTAAAATACTGAA
TGACATATGTCTTATGTTCGGTACAGTACTAATTGTTTTGACAATGACTA
TGCTTAAGTTACCTAGTAAATACTGGATGCTTGGGCACACTTGAAACGAA
ATGTGGAGGGAAATAACGAACATTATTTGTCCTCTGCATGGTGTCCGGAT
TCTATCACTGTTATACAGATGTTTACCTCTTAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_n06.g1 MSMg01no291_n06.g1 CHROMAT_FILE:
MSMg01no291_n06.g1 PHD_FILE: MSMg01no291_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:43 2005
         (287 letters)



>mm_chr3_70536481_70537168
          Length = 688

 Score =  464 bits (240), Expect = e-135
 Identities = 277/290 (95%), Gaps = 5/290 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgtgttgcccaaattaaagggcatatgtggtttgtgttctctcaatggcaatggaaaaa 60
           ||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| |||
Sbjct: 420 gtgtgttgctcaaattaaagggcagatgtggtttgtgttctctcaatgggaatggacaaa 361

                                                                       
Query: 61  tgggttcatgacaaaacagta-ttaagttagacatgatcttctgatgggtttgatgagaa 119
           |||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||||
Sbjct: 360 tgggttcatgacaaaacactactaaagttagacataatcttctgatgggtttgatgagaa 301

                                                                       
Query: 120 tgtgaaagaaataattaaagtgcaatttcatggttataaataaaaatgacataaatatta 179
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgtgaaagaaataattaaactgcaatttcatggttataaataaaaatgacataaatatta 241

                                                                       
Query: 180 ctgacatttctaacagaaatttggaagtcataagaagctg--tttttttttctttttttc 237
           ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |
Sbjct: 240 ctgacatttctaacagaaatttggaagtcataagaagctggttttttttttctttttt-c 182

                                                             
Query: 238 ttttttttaaaggaaattatgccttttttgaactgggcaccaaaccaaaa 287
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttttttaa-ggaaattatgccttttttgaactgggcaccaaaccaaaa 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space:   188762
Effective search space used:   188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)