Query= MSMg01no292_c11.b1 MSMg01no292_c11.b1 CHROMAT_FILE:
MSMg01no292_c11.b1 PHD_FILE: MSMg01no292_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:08 2005
(604 letters)
>mm_chr3_140194896_140195899
Length = 1004
Score = 1044 bits (540), Expect = 0.0
Identities = 588/612 (96%), Gaps = 13/612 (2%)
Strand = Plus / Plus
Query: 3 cctgaatcatatattaactgagtgcttaatactaattgcaataatctcaactctgaataa 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cctgaatcatatattaactgagtgcttaatactaattgcaataatctcaactctgaataa 262
Query: 63 aagagcacagaattgatgatgtttttaattacaatacatttttaaataccatgctttaac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aagagcacagaattgatgatgtttttaattacaatacatttttaaataccatgctttaac 322
Query: 123 cttatattgaactttaaaaattgctgacgttgtattttctgcgactaacagaaaaccttc 182
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 323 cttatattgaactttaaaaattgctgactttgtattttctgtgactaacagaaaaccttc 382
Query: 183 tgtgaataaaataatgacattcacgggataagagtgagtaattttcgaatgctgcctctg 242
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtgaataaaataatgacattcatgggataagagtgagtaattttcgaatgctgcctctg 442
Query: 243 tgccaaattttaaaccagacacatcagtagaatgagatagaaataattatctttgttata 302
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgccaaataggaaaccagacacatcagtagaatgagatagaaataattatctttgttata 502
Query: 303 ttgataagtcatttgaaggccaaagagcttaaattatgtgcaacacccatagagcaggaa 362
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 503 ttgataagtcatttgaaggccaaagagcttaaattatgtgcaaaagccatagagcaggaa 562
Query: 363 agttagacatgttacactacaggtttatttaaattttcaatccatgctattctctttgca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agttagacatgttacactacaggtttatttaaattttcaatccatgctattctctttgca 622
Query: 423 atctatacatacaattatttaaaattatagagtagaaattatgaatgataaaaccaatgt 482
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atctatacatgcaatcatttaaaattatagagtagaaattatgaatgataaaaccaatgt 682
Query: 483 ttctgagatttcaacatccaattcttgtctttacccccagtttaaaattcatttgcaaaa 542
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttctgagatttcagcatccaattcttgtctttacccccagtttaaaattcatttgcaaaa 742
Query: 543 aaaaat-------------taaagtttacatattaaccagccagatatttaaataatatt 589
|||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aaaaataaacaaacaaaattaaagtttacatattaaccagccagatatttaaataatatt 802
Query: 590 gtattctttttg 601
||||||||||||
Sbjct: 803 gtattctttttg 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no292_c11.g1 MSMg01no292_c11.g1 CHROMAT_FILE:
MSMg01no292_c11.g1 PHD_FILE: MSMg01no292_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:08 2005
(557 letters)
>mm_chr3_140359505_140360460
Length = 956
Score = 919 bits (475), Expect = 0.0
Identities = 528/557 (94%), Gaps = 19/557 (3%)
Strand = Plus / Minus
Query: 1 ttttgaaagagatcacaagaactgaaacaccaagggggcacagattcagctcctttgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 ttttgaaagagatcacaagaactgaaacaccaagggggcacagattcagctcctttgttc 895
Query: 61 tctgtgtatggccagagctctcggtggttgacattatagcaagttattccacccaccttt 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 tctgcgtatggccagagctctcggtggttgacattatagcaagttattccacccaccttt 835
Query: 121 cttctcggcatgcatctctgagccagaactcactctagccaaaatgatttctttattttt 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 834 cttctcggcatgcatctctgagccagaactcactctagccaaactgatttctttattttt 775
Query: 181 tctttaaatacaaaaaaaaccaacaacaacaacaacaaaaaaacatttagacaaaccctt 240
||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 774 tctttaaatacaaaaaaaa-----------------aaaaaagcatttagacaaaccctt 732
Query: 241 gcttcattgattatttggcttcccttgaatatgagcttttccaacccagaattcttttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 731 gcttcattgattatttggcttcccttgaatatgagcttttccaacccagaactcttttat 672
Query: 301 actccttgcactttatgctcatgttttagtcatgcattaacaaacattttttttgagttg 360
|| ||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 671 tttcgttggactttatgctcatgttttagtcatgcattaataaaca--ttttttgagttg 614
Query: 361 aattgaattcattctttttaatcctctaaatctctgtatctgatgttaaggattaaccaa 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 613 aattgaattcattctttttaatcctctaaatctctgtatctgatgtgaaggattaaccaa 554
Query: 421 taatgtatttatgtcacatcaaacgtgtgttcaaatgaagaaaagaaaatttgcaattag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 taatgtatttatgtcacatcaaacgtgtgttcaaatgaagaaaagaaaatttgcaattag 494
Query: 481 tcctttgccatattggctctatacaaagtatagcatagcactaagtgaaattgcatatgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcctttgccatattggctctatacaaagtatagcatagcactaagtgaaattgcatatgt 434
Query: 541 attttaaacattttcta 557
|||||||||||||||||
Sbjct: 433 attttaaacattttcta 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 956
Length adjustment: 10
Effective length of query: 547
Effective length of database: 946
Effective search space: 517462
Effective search space used: 517462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
