BAC Information

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BAC

Clone NameMSMg01-292F06
Chromosome3 (Build37)
Map Location 102,251,182 - 102,251,470
singlet/doubletsinglet
Overlap genenone
Upstream geneIgsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1, EG433633
Downstream geneNgfb, Tspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292F06.T7 (MSMg01no292_f06.b1)MSMg01-292F06.TJ (MSMg01no292_f06.g1)
ACCAG421078AG421079
length794806
length of high quality
(start - end)
255 (46 - 300)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no292_f06.b1 PHD_FILE: MSMg01no292_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:22 2005CHROMAT_FILE: MSMg01no292_f06.g1 PHD_FILE: MSMg01no292_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGATTTTGT
CAAATGCTTTCTCAGCATCTAACCCCATGATCATGTGGTTTTTGTCTTTG
AGTTTGTTTATATACTGGATTACATTGATGGATTTCTGTATATTGAACCA
TCCCTGCATCCCTGGGATGAAACCTACTTGGTAGGATGGATGATTGTTTT
GATGTGTTCTTGGATTCGGTTAGCAAGAACTTTATTGAGGATTTTTGCAT
CGACATTCATAACGCAAATTGTTTTTAAGTTCTCTATCTTTGTTGTGTCT
AGAAGAGGATTTTTTTTTTTTACCCCCCCCCCCCCCCAATAATGAAATGT
AAAAAAGAATTTTTCCCCCCCCCCCNNAAAAAAAAAAAAAAAAAAAGGTT
TGGGGTGTGTTTTTTTCTTTACACCCCTTTAACCCCTCCTTTCTTTATCA
TTCACTCTTACCCCCACCCCCCTTCTTTTTTTTCATTTACTTCCCATTTT
CACTTCCCAATTCTATACTTTTTTTTTTATTTTTTTTCTCCCTCCTTTCT
CCCTTTTTTTATCCTCATCTCCCTTCCTCCTCTCTACTTCCTTTTCTTTT
CTATCCTTTATATTTACCACTCATATTTCATCCTCCAACCCCCTCTATCC
TCTCTTACTACTTTCTCTTCCTTCCCAACTTAATTTTTCTTAATCACTAA
TTTTTCCCCTCACATATTTAATATACTTTCCTCTCCATTTACCA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAGAGTCTTTGTCCAAAAGGG
AATTCTGTGATAGTGTTTGTCCAAACCGGTGTGTGGCCTTCAAGTGACTG
ATGCTAGACTCTAGGTGTCAGATTGATTTTTTTTTGTTAACAAGTTCATA
TCTTGTAGAATCTGAGGTGAGCCATGAACTTCCAGTTTTTCTAGTGGGCA
AATGCCCTCAAGACTCCCTGTGCTGTCTTCACAGATGGCCCTGATCCTTT
TGCTTCTAAACTGATATTCTGGCATGAACAAGAAAGGCCGTACCCTTCTC
CTGAGTGAGTAGCTCTGTTTTATGTTGCTCTACCCGCAAAGTGCTGGCTG
GGACAGATCTTGTCCCCCCGCTTTTAAAATTAAGAAATAAGATGCCCAGG
GGAATGTGAGTGGTCCACTGTGCTGGTGGTAGGCCTGATTGAACCCTCAC
TGTATGTACAGTTACTGTTGTGCTCCCCTGCTTGTACACCCGCCTTGGCA
TGCCCTTAACTTCCTCCAGATTTAAATTACTCCCCTTCCAACCCTTTGTT
TATCCTTTTTCTTCTTGCCCCCTCCCCTCTATCTCCCTTTTTTTTTCACC
TTTATTATTTCTCCTATTTCTATCCCCACTTCCCATCCTTCTTTCCCTTT
CTTCCCTTTGATCCCTCTTTTTTCTCCTTTCCCCCTCCCCTTAATGTCTT
CCTCACTCTTTCTCAGTCCCCCTCTTTCTTACTCCTACTCTATACGTTTG
CCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_f06.g1 MSMg01no292_f06.g1 CHROMAT_FILE:
MSMg01no292_f06.g1 PHD_FILE: MSMg01no292_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:22 2005
         (291 letters)



>mm_chr3_102250982_102251670
          Length = 689

 Score =  474 bits (245), Expect = e-138
 Identities = 279/291 (95%), Gaps = 2/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgagagtctttgtccaaaagggaattctgtgatagtgtttgtccaaaccggtgtgtgg 60
           ||||| ||||||||||||||||||||||||||||||||| |||||||||  |||||||||
Sbjct: 489 tgtgatagtctttgtccaaaagggaattctgtgatagtgattgtccaaaagggtgtgtgg 430

                                                                       
Query: 61  ccttcaagtgactgatgctagactctaggtgtcagattgatttttttttgttaacaagtt 120
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||
Sbjct: 429 ccttcaagtgactgatgctagactctaggtgtcagattga--tttttttgttaacgagtt 372

                                                                       
Query: 121 catatcttgtagaatctgaggtgagccatgaacttccagtttttctagtgggcaaatgcc 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 catatcttgtagaatttgaggtgagccatgaacttccagtttttctagtgggcaaatgcc 312

                                                                       
Query: 181 ctcaagactccctgtgctgtcttcacagatggccctgatccttttgcttctaaactgata 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctcaagactccctgtgctgtcctcacagatggccctgatccttttgcttctaaactgata 252

                                                              
Query: 241 ttctggcatgaacaagaaaggccgtacccttctcctgagtgagtagctctg 291
           |||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 251 ttctggcagggacaagaaaagccgtacccttctcctgagtgagtagctctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 689
Length adjustment: 9
Effective length of query: 282
Effective length of database: 680
Effective search space:   191760
Effective search space used:   191760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)