BAC Information

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BAC

Clone NameMSMg01-292H14
Chromosome3 (Build37)
Map Location 40,059,466 - 40,059,762
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292H14.T7 (MSMg01no292_h14.b1)MSMg01-292H14.TJ (MSMg01no292_h14.g1)
ACCAG421185AG421186
length746751
length of high quality
(start - end)		367 (45 - 411)297 (77 - 373)
definitionCHROMAT_FILE: MSMg01no292_h14.b1 PHD_FILE: MSMg01no292_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:33 2005CHROMAT_FILE: MSMg01no292_h14.g1 PHD_FILE: MSMg01no292_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATGATTCACGCACACAGCCTTATTTTTAATATGCCTTAAGCACT
TCAATGACTGGGTTACTCACTCACTCCATGTGACTAACACACACTCCCCT
CACATATTCCTGAATTAATACTTAGTCGATCTATATTTCATCTTTGCTGC
CCTGGACCCTGCTGGACAGCCCTCCTGGGGCCGCTTTCCCCTGTACCTGC
ATTTAGGCTGACTCTCCCTCCTGTGCCTTTCTGACTTGGTCTGTCTCTGT
GCTCTTCCCATGGCAAAATCCCCTCTTTCTCCTTCCTTGCTTCCTTTCTG
GATTCCTTATAGTATCTCTGCCCAGCCGTTGGCCACCAACAACTTTATTG
ACCAGTCAAACCCCCCTTGGGGATAAGCTTCCTTTAGTCCGAGTGCAGGA
CCCTACAAACAGGTTTTTTCAGGTAACATAATTATCATGAGAACACAAGC
CACTACAGCTATATAGAACTCCAGGGATTCCCCTGCTCTGCTTCCAGCTT
TTTAGGTGGGAGTGGAAATCTGATTCAAGTCCTCATGCCTTCTGCAGCAA
AACTTATCTACTGAGATTCTCAGTCCCACAGACATTTTTTTCTGAAGCAC
TTACTGTTATTAATAGAAAACTCTATCCCAATTACTTGAATGGTACTGAA
AGGTAACGTCCTTCTAGTTTAAATGAATCATTAATTTGAATAATTG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGAGATTAATGCTTTTTGATAC
CCATTTTGGATAATGCTACATTTAAACAGTACAAGAAAAGGCAAAGGAAA
CTGGCAGCCCCTCCTCCCAACCTGAGGTCCTTGGCAAGAGCCGGATGGGA
TGTCTCTCACCCACTAACTCCATCGCAAATGAAGCAGATGTTCTGTCTTT
GCCCCCAAAACTCTTATTCCGAAACAAAAAGATTAGTGAGGATTGAAAAA
TGAGTGTGAGGAGACAGTGGAAACCCTTTATTAAATAAGCGTTGGTTGTA
TTTAATTTTCAAATTTTTACTGGAGCCAGCGCGTGGTGGCCCATATCTTT
AATCCCAGTATTTGCCCCCCCCATTTTCGAAAACTTCTTAGTTCAAGGCC
ATCCTGGTCTTAAACCCTTGCTTAAAAAACAAAATTAACTAACTAACTAA
CTAACTAAGTAGCTAAAAAAAAAAAAAAAAAGTAAATGGGCTTCCAAGGC
CTTTCATTTTAACCCGTGACATGTTCTGCCTTTTGGCGGTTATTTACGCA
CTATCACCCCGAGGTATTCTATAATAAGATTTTGACCCCTTCTAAATTAT
TGTCTGTCTTCTCCGGTGTCCAGATCCCCCCTTTTCCCCTACCTCCCCCT
GTCTTTCTAACCTACTATATTCCCCTTCTCCTTCTATCTTTTATACTTTC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_h14.g1 MSMg01no292_h14.g1 CHROMAT_FILE:
MSMg01no292_h14.g1 PHD_FILE: MSMg01no292_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:33 2005
         (297 letters)



>mm_chr3_40059266_40059962
          Length = 697

 Score =  551 bits (285), Expect = e-161
 Identities = 294/297 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgagattaatgctttttgatacccattttggataatgctacatttaaacagtacaaga 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 catgagattaatgctttatgatacccattttggataatgctacatttaaacagtacaaga 438

                                                                       
Query: 61  aaaggcaaaggaaactggcagcccctcctcccaacctgaggtccttggcaagagccggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaaggcaaaggaaactggcagcccctcctcccaacctgaggtccttggcaagagccggat 378

                                                                       
Query: 121 gggatgtctctcacccactaactccatcgcaaatgaagcagatgttctgtctttgccccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gggatgtctctcacccactaactccatcgcaaatgaagcagatgttctgtctttgccccc 318

                                                                       
Query: 181 aaaactcttattccgaaacaaaaagattagtgaggattgaaaaatgagtgtgaggagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaaactcttattccgaaacaaaaagattagtgaggattgaaaaatgagtgtgaggagaca 258

                                                                    
Query: 241 gtggaaaccctttattaaataagcgttggttgtatttaattttcaaatttttactgg 297
           ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 257 gtggaaaccctttattaaataagcgctggttgcatttaattttcaaatttttactgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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