CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCCTTATGCCTAAAAACAGGAAAATGCACACACTTATTATATAT
ATAATAAGGTGTGTGTGTGTGTGCATTCCATATGTGTGTATGTATATATA
TATATCTTATAACAGAAAGCTGCACCTATTATTGATGTGTATTCAAATTG
CCAAATTGTAGAACCAATCTAGTTTTGTACTAGTGGAAGACAGTCCTCAT
CGGTAGATGGTAAATACCATACCATGCCTGTCACATAAACTCGTGATGCT
AATGGACCTTCTGTCCATAGACAACTGAATGGGTAAAGGGCACTCTTCAT
CCCAGGGAATAACATGATGTTGAACTGGCCTGTGTGTCCCAACCCTCCTT
CCCCCTTTTCAGCACTCTCCCTTCTCATCCAACTGTATATGTCTACAAGT
TCATGTGAGTTACCCTTTCTCCAGGCCATTGTTCTGATATTGTATTCTTG
CACCTGTTTTAATATCAAACTTGATCATATGTCCTTGCCTTGCTGACCAT
GGTGAATGGCTCGGACCTCTAAGCTTCCCAGCCCTCTGACTGTGAGGTCA
TTAGGCTAAATCAGTTCTTCAGTGGTAATTCTTTCTGGTCCTGAGCACAC
AGCTTAATATAACATGGCTGCCTATCATGGCTGACTTCATCATCAATTTG
ACATAGTTTAAAATCACCATGGAAGCACAACTGTGGATATAGCTATG

TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAACGGATGTCCTGGGATAG
AAACAACACGGTATGAGTGAGTGTCCCTCTACGGTCTGCAAAGACCCTNG
AAGCTNAATGAGCAGTGGAGGCTGGGGCTGGGTTTGGGGCAGTGGAGAAA
CTTGTAAAATATTGCNGAANGATTTNNGAANGANGAGAGANANNNAGAGA
GAGAGAGAGAGAGGGGGNGGNNAAAGGAGGAAGNAANNANNNNNNNNNNN
NNNNNANNNNNNNNNNNNNAAANANANTTTTTTTTTTTGGAAGAATAGGA
GAGAAAGAGAAAAAATTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCAAA
GAGAAAGTAAAGGGAGNGNNGGGGGGGCCCCCCCCAAAAAAAAAAAAAAA
AAAACACGTCTGGGGGGGGGGGGGGGGCCTCCTCAATCTTATTCAATTTT
GTTCATTTTCTCTCCATTATCTTTTCTTTCTCTTTTCCCTTCCCGCTCCT
TTCTCTATTTAATTACTCATTTTCTGAATTATACGCCCTCTCTCTTCCCT
TCCTCTATGCAACCTACTTGTGTATGCATTCGTACTCTCCTTTTCCCACC
TTTTCCACCACTATTCTTCTTAAGATATAATAATG

Query= MSMg01no292_p24.b1 MSMg01no292_p24.b1 CHROMAT_FILE:
MSMg01no292_p24.b1 PHD_FILE: MSMg01no292_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:14 2005
         (674 letters)



>mm_chr3_53561046_53562119
          Length = 1074

 Score = 1265 bits (654), Expect = 0.0
 Identities = 666/670 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgccttatgcctaaaaacaggaaaatgcacacacttattatatatataataagg 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 gaattctgccttaagtctaaaaacaggaaaatgcacacacttattatatatataataagg 921

                                                                       
Query: 65  tgtgtgtgtgtgtgcattccatatgtgtgtatgtatatatatatatcttataacagaaag 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 tgtgtgtgtgtgtgtattccatatgtgtgtatgtatatatatatatcttataacagaaag 861

                                                                       
Query: 125 ctgcacctattattgatgtgtattcaaattgccaaattgtagaaccaatctagttttgta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 ctgcacctattattgatgtgtattcaaattgccaaattgtagaaccaatctagttttgta 801

                                                                       
Query: 185 ctagtggaagacagtcctcatcggtagatggtaaataccataccatgcctgtcacataaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctagtggaagacagtcctcatcggtagatggtaaataccataccatgcctgtcacataaa 741

                                                                       
Query: 245 ctcgtgatgctaatggaccttctgtccatagacaactgaatgggtaaagggcactcttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctcgtgatgctaatggaccttctgtccatagacaactgaatgggtaaagggcactcttca 681

                                                                       
Query: 305 tcccagggaataacatgatgttgaactggcctgtgtgtcccaaccctccttccccctttt 364
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tcccagggaataacatgaggttgaactggcctgtgtgtcccaaccctccttccccctttt 621

                                                                       
Query: 365 cagcactctcccttctcatccaactgtatatgtctacaagttcatgtgagttaccctttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagcactctcccttctcatccaactgtatatgtctacaagttcatgtgagttaccctttc 561

                                                                       
Query: 425 tccaggccattgttctgatattgtattcttgcacctgttttaatatcaaacttgatcata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tccaggccattgttctgatattgtattcttgcacctgttttaatatcaaacttgatcata 501

                                                                       
Query: 485 tgtccttgccttgctgaccatggtgaatggctcggacctctaagcttcccagccctctga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgtccttgccttgctgaccatggtgaatggctcggacctctaagcttcccagccctctga 441

                                                                       
Query: 545 ctgtgaggtcattaggctaaatcagttcttcagtggtaattctttctggtcctgagcaca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgtgaggtcattaggctaaatcagttcttcagtggtaattctttctggtcctgagcaca 381

                                                                       
Query: 605 cagcttaatataacatggctgcctatcatggctgacttcatcatcaatttgacatagttt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagcttaatataacatggctgcctatcatggctgacttcatcatcaatttgacatagttt 321

                     
Query: 665 aaaatcacca 674
           ||||||||||
Sbjct: 320 aaaatcacca 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)