Query= MSMg01no293_h04.b1 MSMg01no293_h04.b1 CHROMAT_FILE:
MSMg01no293_h04.b1 PHD_FILE: MSMg01no293_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:51 2005
(721 letters)
>mm_chr3_48748916_48750036
Length = 1121
Score = 1342 bits (694), Expect = 0.0
Identities = 708/716 (98%), Gaps = 6/716 (0%)
Strand = Plus / Plus
Query: 5 gaattctcatgggtatttttgtaataatatttgcattaatacatggcaaacacacaatcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatgggtatttttgtaataatatttgcattaatacatggcaaacacacaatcc 264
Query: 65 tgagtaaatatgcatatatattttaaagagtaaaacactttattttatttttaacagtaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgagtaaatatgcatatatattttaaagagtaaaacactttattttatttttaacagtaa 324
Query: 125 ataattctattaattggtatgtctataagttttctagtactgtgacttttaaatatttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataattctattaattggtatgtctataagttttctagtactgtgacttttaaatatttta 384
Query: 185 attaagtgaatttatgaaggacaaaacaatttaaattaaaaaccttaaaatttaattata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attaagtgaatttatgaaggacaaaacaatttaaattaaaaaccttaaaatttaattata 444
Query: 245 aaagaactatttataggccggggagtggtggcacatgcctgtaatcccagcactttaatc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagaactatttataggccggggagtggtggcacatgcctgtaatcccagcactttaatc 504
Query: 305 ccagcacttgggaggcagaggttagtggtggatttctgagttcgaggccaacctggtcta 364
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagcacttgggaggcagaggcaagtggtggatttctgagttcgaggccaacctggtcta 564
Query: 365 cagagtgaattccaggacagccaaggctgcacagggaaaacctgtctcgaaaagctaata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagagtgaattccaggacagccaaggctgcacagggaaaacctgtctcgaaaagctaata 624
Query: 425 ataataataataataataataataataataataataataataaatataaataaataaata 484
||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 625 ataataataataataataataataataataataataa------atataaataaataaata 678
Query: 485 aatgaaagacttatttgcatatgtgcatgtgtgcatgtgtttaatatatgtggctgaatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aatgaaagacttatttgcatatgtgcatgtgtgcatgtgtttaatatatgtggctgaatg 738
Query: 545 cagacacacatgtattacagtacctgtgatacatgaacaggggacaattctcagagttca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cagacacacatgtattacagtacctgtgatacatgaacaggggacaattctcagagttca 798
Query: 605 gttctctgtttctaccttgctttgaggtagaatcccttttattcctgctgcatccttctg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gttctctgtttctaccttgctttgaggtagaatcccttttattcctgctgcatccttctg 858
Query: 665 tgtactcaggatagctggggttttagcttctgtacataattatctctgcctctccc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tgtactcaggatagctggggttttagcttctgtacataattatctctgcctctccc 914
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1121
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1111
Effective search space: 789921
Effective search space used: 789921
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no293_h04.g1 MSMg01no293_h04.g1 CHROMAT_FILE:
MSMg01no293_h04.g1 PHD_FILE: MSMg01no293_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:51 2005
(288 letters)
>mm_chr3_48825130_48825817
Length = 688
Score = 549 bits (284), Expect = e-161
Identities = 287/288 (99%)
Strand = Plus / Minus
Query: 1 ttgggttttgcttgtttgaatttgttttcagggagtatctatctggttataaattcagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgggttttgcttgtttgaatttgttttcagggagtatctatctggttataaattcagtt 261
Query: 61 tcctacctcagtttcctgagtgctggctctccctatatacactactatgcttggcattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcctacctcagtttcctgagtgctggctctccctatatacactactatgcttggcattaa 201
Query: 121 aaactgacagttacatatgcggctggagccacgggcccttctatgtgtactctttggttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aaactgacagttacatatgcggctggagccacgggcccttctatgtgtactctttggttg 141
Query: 181 gtggttagtccctgggagctctgagggatggacaggaggagaggggtgggaaaagaggtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gtggttagtccctgggagctctgagggatggacaggaggagaggggtgggaaaagaggtt 81
Query: 241 ttcagaggaggatcgaggaaaggggacaacatttgaaacataaataaa 288
|||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 80 ttcagaggaggaacgaggaaaggggacaacatttgaaacataaataaa 33
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
