BAC Information

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BAC

Clone NameMSMg01-294A04
Chromosome3 (Build37)
Map Location 105,342,278 - 105,517,587
singlet/doubletdoublet
Overlap geneKcnd3, Ddx20, 6530418L21Rik
Upstream geneSlc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik
Downstream geneRap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294A04.T7 (MSMg01no294_a04.b1)MSMg01-294A04.TJ (MSMg01no294_a04.g1)
ACCAG422299AG422300
length728735
length of high quality
(start - end)
321 (41 - 361)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no294_a04.b1 PHD_FILE: MSMg01no294_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:35 2005CHROMAT_FILE: MSMg01no294_a04.g1 PHD_FILE: MSMg01no294_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:29:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,517,271 - 105,517,587)(105,342,278 - 105,342,566)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCCTGCCTTCTCTGCCTCGCTGGCTCTGTCATGCCAGAAGCAGGGATTC
CGGGGTCAGTTCCCCTACCCTCACGTCCTAGGTACCATCTGGAGGGGCCG
AGGGACTGACTTTACTTGGGTGAGGGCCCCCACTTGGAGGCTGGAGAGGA
GAGGCTGCTCCTGATAACATTCACAAAGTTCCTAGCCCCTGCCCAAGCTG
CCTTGGGCCTGCCAGCTCCCTCCCTACATCCTGATCAAATTACTCACAGT
GAGCCTCTGTGCGGGAACCATCTGTTTTTTAAGCCCCCCAGAGACCCACA
GGATCATCTTATTTCCCAGCCTCGTCCTAATGCCCAGAGCTAACTCCAAG
GCATGCTGGGGTCGCGGACTGAGGGACACAGAAGCACTGCAGTGTGGGCT
GTCAGTTGGCCCTCTCTGGCTTCTAAGTTAAATCTCCTGCCAACCCTGGC
CTGGTAGGGAGAGATCTATCCAAGCTCCCTTGAGCCAGCAGCACTAAAGG
TCAGTGGAGGACTGTCAGCCCCCGAGGGCCGGGAGGCCTTTTCTGGGCTG
CTGCCCTTGCTTTGTGCATTCTCCTGAGACAGGGAGAGAAATGACACAGG
CTAACAGCTCTGGGACTTGCTGGGGGCACCTATGAGCCATTTGAGTGGCA
GGAGACATAGACCCCATGGAGTAGCTGG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACACTCTTGGACTTGGAAGGAGGCTCCTG
CAGGCACCAGAGAAGGCTCAGAGCCTCCGAGTGCAGAACCTAGGAGAGGG
CTGCTTAGTGGTCAGTCAGCGAGACAGAGCTGGGAGCAATTGAGCATTTG
CCCTAGCATGCTGGAGTAATGACCCCTCAGAAAGATTCCAAGTTTGGAAG
GGCAGGGCAGACTTGAGTGGTTGGAAATTGAGGTTAATGGCCAGCCAGCC
TGGAAGATGTGCTCTGCGTGTCCCATCTCACACCCTCCAAAGACACATGA
AAGGGGTTTATTTTTTCCACACCCAGCCCCATTGTTTGTTTGCCTGAATT
CACCAGGTAATTGCATGCTCCTCTGCTGACTTCTGCTGCCTGCATTGGGC
TTTTTAGAGAGATAAGCAAAGGCAAAATGAGGGTTCTGGTCTCCTGAGGC
TCTTATGCTCCGAGTTACACGACAAGAGATGCAGAAGGAAGGGCCAAGGC
AGAGGCTCATGCAAATGAGCGTGATGGGAAATGGAGGAGGGGCTGAAGGA
GGAGCACCCGATGGATCTGAGGAACCCTCGGCCTGACATTCTTTTGGGAT
ACTGACAATGCCAGGCGACAGGTTCCATCTAAGATAATTCTGAGCACTCA
AGTCTTATCCAAATATGTCCATAGCTACAAGCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_a04.b1 MSMg01no294_a04.b1 CHROMAT_FILE:
MSMg01no294_a04.b1 PHD_FILE: MSMg01no294_a04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:35 2005
         (321 letters)



>mm_chr3_105517067_105517787
          Length = 721

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcctgccttctctgcctcgctggctctgtcatgccagaagcagggattccggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattcttcctgccttctctgcctcgctggctctgtcatgccagaagcagggattccggg 462

                                                                       
Query: 65  gtcagttcccctaccctcacgtcctaggtaccatctggaggggccgagggactgacttta 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtcagttcccctaacctcacgtcctaggtaccatctggaggggccgagggactgacttta 402

                                                                       
Query: 125 cttgggtgagggcccccacttggaggctggagaggagaggctgctcctgataacattcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cttgggtgagggcccccacttggaggctggagaggagaggctgctcctgataacattcac 342

                                                                       
Query: 185 aaagttcctagcccctgcccaagctgccttgggcctgccagctccctccctacatcctga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaagttcctagcccctgcccaagctgccttgggcctgccagctccctccctacatcctga 282

                                                                       
Query: 245 tcaaattactcacagtgagcctctgtgcgggaaccatctgttttttaagccccccagaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcaaattactcacagtgagcctctgtgcgggaaccatctgttttttaagccccccagaga 222

                            
Query: 305 cccacaggatcatctta 321
           |||||||||||||||||
Sbjct: 221 cccacaggatcatctta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no294_a04.g1 MSMg01no294_a04.g1 CHROMAT_FILE:
MSMg01no294_a04.g1 PHD_FILE: MSMg01no294_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:29:35 2005
         (291 letters)



>mm_chr3_105342078_105342768
          Length = 691

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acactcttggacttggaaggaggctcctgcaggcaccagagaaggctcagagcctccgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acactcttggacttggaaggaggctcctgcaggcaccagagaaggctcagagcctccgag 260

                                                                       
Query: 61  tgcagaacctaggagagggctgcttagtggtcagtcagcgagacagagctgggagcaatt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagaacctaggagggggctgcttagtggtcagtcagcgagacagagctgggagcaatt 320

                                                                       
Query: 121 gagcatttgccctagcatgctggagtaatgacccctcagaaagattccaagtttggaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcatttgccctagcatgctggagtaatgacccctcagaaagattccaagtttggaagg 380

                                                                       
Query: 181 gcagggcagacttgagtggttggaaattgaggttaatggccagccagcctggaagatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagggcagacttgagtggttggaaattgaggttaatggccagccagcctggaagatgtg 440

                                                            
Query: 241 ctctgcgtgtcccatctcacaccctccaaagacacatgaaaggggttta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctgcgtgtcccatctcacaccctccaaagacacatgaaaggggttta 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)