BAC Information

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BAC

Clone NameMSMg01-294L08
Chromosome3 (Build37)
Map Location 68,377,155 - 68,578,717
singlet/doubletdoublet
Overlap geneSchip1, Il12a
Upstream geneMfsd1, LOC667207, Gm412, EG208426, EG545531, LOC631379
Downstream geneLOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294L08.T7 (MSMg01no294_l08.b1)MSMg01-294L08.TJ (MSMg01no294_l08.g1)
ACCAG422812AG422813
length751784
length of high quality
(start - end)
321 (47 - 367)237 (132 - 368)
definitionCHROMAT_FILE: MSMg01no294_l08.b1 PHD_FILE: MSMg01no294_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:27 2005CHROMAT_FILE: MSMg01no294_l08.g1 PHD_FILE: MSMg01no294_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,377,155 - 68,377,469)(68,578,483 - 68,578,717)
sequence
TCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCACTTCAGACAATTTCCAAAGCTCCTTTCCCGAGTGAGTGTT
TCATAACTCCTTCCTACCACTTGGGCTGTAGAGGCAACACTGTAAACAGC
AAGAATGTTCTCAGAGAAACTGCTCTATGCAGTGGCTGGCCTGGCTGGTG
GACATCCTGGGTGGCTGGCATTGAGATATTTACTCACCTGATGGAGTTTC
TCAGAGACCAGCTCTCTAGCTTAACAAAGCCTCTTCCTGGTGAGAGGTGG
GTTACCTGAGCCAAGCAGGTGTTTCTCTGAGGGTCACATTTCAGTGTGAA
TGTCTGCAGGCGGATTGTGTTGTTTTTTCACCCCACTCCAGGAAGGCAGC
TGTTGCTAGCTAGCTAAGTGAAGCGTGCCTATGAAATAAAACTGTGTACT
ATTTTTGTGCTTAATAATCAGAATTTTATAATCATAGGCCTGCTTTGTGG
CATTTTCATTTGACGAGACATTTGGCTCCACATATAGATCCTTATGTATC
AGGATTTGTGTTTCACGGGCGTTCTTTCCATGAGAAAGTGAGAGAACTGA
TAAAAGGCCCACGTTGTATGGTGGGTTACCTCCGGTTATCCATGGAAAGC
CTCCTGTGTAAATGGGCTCAATAGGGCTTGTCCGCAGATTATATTTACCG
CCCTAAATTAAAAAAAGTCCTTCCCTTCTTTACTTTTCCAAAAAGAAACT
T
CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGACACAAGGATCAACATGCTC
AAAATTTGCAATGCAAATCATATTTGCCACGTCTCATGTGACAAGCACCT
ACATGCCATGAGCTAAATGTAAGATTGCTTGCTTTACAGAATATATTAGT
TGCTATGTCCTTGCGATTAGTTCATTGCCAGTTCCAGAGCCCACGCAGGA
TACCTTGACGGAAGATCTTCCTTTTCCATCCTAGCCAGTAGGCTTATGAG
AGACATGCCAATGATAACACACACACACACACACACACACACACACACAC
ACACACACACACACACTCTTTTTTTTTTTTGACACCACCACACACGAGAG
AGAGGTATAGGGAGAGAGAGAGAGAGAGAGAGAGCAATAAAAAAAAAAAA
AAAGTCTCATACTGTTTAGAGATATTTGACAGTACCTTGTCGGATGAATT
CAAAAGCCTGCCACTTTGCAGTTTGAAAGGCTATGTTTTAATTGAGAATG
TATTCGAACAAGAAAAACTCTAAATACAACCTTTCCTTTAACCTTGACCG
CGCATTCTGACAATTTCCACTTTTAGACATCGATGCTTGCCACACAGCCA
ATTCCTCTTTATCCTTCCTCTTGGTCATGCATTATACCAACCCCTTACTA
ATATTTCCTGTTCCCCTAATAATGGTCTCTTCTCATAACCTGGTCCCAAC
CTTGTGGTAACTTTCTTTTTTATCTCCGCACTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_l08.b1 MSMg01no294_l08.b1 CHROMAT_FILE:
MSMg01no294_l08.b1 PHD_FILE: MSMg01no294_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:27 2005
         (321 letters)



>mm_chr3_68376952_68377672
          Length = 721

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaccacttcagacaatttccaaagctcctttcccgagtgagtgtttcataactc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaccacttcagacaatttccaaagctcctttcccgagtgagtgtttcataactc 263

                                                                       
Query: 64  cttcctaccacttgggctgtagaggcaacactgtaaacagcaagaatgttctcagagaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttcctaccacttgggctgtagaggcaacactgtaaacagcaagaatgttctcagagaaa 323

                                                                       
Query: 124 ctgctctatgcagtggctggcctggctggtggacatcctgggtggctggcattgagatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgctctatgcagtggctggcctggctggtggacatcctgggtggctggcattgagatat 383

                                                                       
Query: 184 ttactcacctgatggagtttctcagagaccagctctctagcttaacaaagcctcttcctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttactcacctgatggagtttctcagagaccagctctctagcttaacaaagcctcttcctg 443

                                                                       
Query: 244 gtgagaggtgggttacctgagccaagcaggtgtttctctgagggtcacatttcagtgtga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgagaggtgggttacctgagccaagcaggtgtttctctgagggtcacatttcagtgtga 503

                          
Query: 304 atgtctgcaggcgga 318
           |||||||||||||||
Sbjct: 504 atgtctgcaggcgga 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no294_l08.g1 MSMg01no294_l08.g1 CHROMAT_FILE:
MSMg01no294_l08.g1 PHD_FILE: MSMg01no294_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:27 2005
         (237 letters)



>mm_chr3_68578333_68578969
          Length = 637

 Score =  447 bits (231), Expect = e-130
 Identities = 234/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcatgtgacaagcacctacatgccatgagctaaatgtaagattgcttgctttacagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctcatgtgacaagcacctacatgccatgagctaaatgtaagattgcttgctttacagaa 326

                                                                       
Query: 61  tatattagttgctatgtccttgcgattagttcattgccagttccagagcccacgcaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatattagttgctatgtccttgcgattagttcattgccagttccagagcccacgcaggat 266

                                                                       
Query: 121 accttgacggaagatcttccttttccatcctagccagtaggcttatgagagacatgccaa 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accttgacggaagagcttccttttccatcctagccagtaggcttatgagagacatgccaa 206

                                                                  
Query: 181 tgataacacacacacacacacacacacacacacacacacacacacacacacacac 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgataacacacacacacacacacacacacacacacacacacacacacacacacac 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)