NNAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTGATTATCGTGGATTTTTATAGGGTTCTTTAATAAAG
ATCCTATATACATACTTAATCATAGATTTCCCTTTCCTTTGTATTAACAT
TTAGATTTGGGGACTACCCTTTGTAACTTCTACATTATTTTCTCCTTTTA
TACTGTTCAATTATTCCTATAAATTACAAATTATGGGTATCTAAGAAGGG
TTATTCAGCATACATATAATTTATGCTATTTTTCATTTATATCTTGTCAA
TTCTAAAAAATGTATAATTAGCACCTTTATCTCATCCTCTTCTTTAGACA
TTATTTTTATGAGTTTTAATTATGTGTACTTCTGTGCACCTATGGGCACA
TATACATATATCAGCGCAAGCGCCATGGGAAGCCATGATTCCCCTTGGAA
CTGGAGTTACAGATGGGCATGACCCGTTTGATGTAGGCTTGAGACACAAA
GTCAAATATTTTGGAAGCGAAGGGAAGACCCTCAACTTCTGAGGCATCTC
CTGCACCAATCACCTTTGCTTCCCAGGTTCCTTTACCAAGTGAGAAACTA
AATCTAATATAGCATCCAAACATCTTTTTCTCACTGTACTTTCTTCTTTG
CATGAGCAAACTCATTCTACAAAGATCGTTGAGCCTCAGTTGTATGTCCT
ATTACCCACAGTACAGGCCACGAATATGTCACCACAGCAGGACT

CCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCTGAGGAGCACCTGAAAAATTGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCCA
AGGTCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTGGGTGGGACTGCAAGCTTGTACAACCACTCTG
GAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACTGGAGG
ATCCTGCAATACCTCTCCTGGGCATGTTCCAACGGTAAGAAGGTCACATG
CTCCACTATGTTCATAGCACCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGCCCCTCAACAAAGGAATGGATACAGAAAATGTGGTACATT
TACAGAATAAAGTACTACTCTGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGGCAAATGGATGGACCTGCAGGGCATCATCGAGTGAGGTAACTCAA
TCACAAAAGAACTCACATGATATTTATTCACTGATAAGTGGATATTAGCC
CAGAAACTTAGAATACCCAAGATATAAGATACAATTTGTGAAACATATGA
GGCTCGGGAAGTACGAAGACCAAGGTGTGGATACTTTGCCCCTTCTTGGA
AT

Query= MSMg01no295_a07.b1 MSMg01no295_a07.b1 CHROMAT_FILE:
MSMg01no295_a07.b1 PHD_FILE: MSMg01no295_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:49 2005
         (689 letters)



>mm_chr3_77260381_77261469
          Length = 1089

 Score = 1085 bits (561), Expect = 0.0
 Identities = 626/653 (95%), Gaps = 10/653 (1%)
 Strand = Plus / Plus

                                                                       
Query: 47  agatcctatatacatacttaatcatagatttccctttcctttgtattaacatttagattt 106
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 247 agatcctatatacatacttaatcatatatttccctttcctttgtattgacatttagattt 306

                                                                       
Query: 107 ggggactaccctttgtaacttctacattattttctccttttatactgttcaattattcct 166
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggggactatcctctgtaacttctacattattttctccttttatactgttcaattattcct 366

                                                                       
Query: 167 ataaattacaaattatgggtatctaagaagggttattcagcatacatataatttatgcta 226
           |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 367 ataaattaaaaattctgggtatctaagaagggttattcagcatacatataatttgtgcta 426

                                                                       
Query: 227 tttttcatttatatcttgtcaattctaaaaaatgtataattagcacctttatctcatcct 286
           ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 427 tttttcacttatatcttgtcaattctaaaaaatgtataattagcatctttatctcatcct 486

                                                                       
Query: 287 cttctttagacattatttttatgagttttaattatgtgtacttctgtgcacctatgggca 346
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 487 cttctttagagattatttttatgagttttaattatgtgaacttctgtgcacctatgggcg 546

                                                                       
Query: 347 catatacatatatcagcgcaag--c--------gccatgggaagccatgattccccttgg 396
           |||||||| |||||||||||||  |        |||||||||||||||||||||||||||
Sbjct: 547 catatacacatatcagcgcaagtgccatgggaagccatgggaagccatgattccccttgg 606

                                                                       
Query: 397 aactggagttacagatgggcatgacccgtttgatgtaggcttgagacacaaagtcaaata 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aactggagttacagatgggcatgacccgtttgatgtaggcttgagacacaaagtcaaata 666

                                                                       
Query: 457 ttttggaagcgaagggaagaccctcaacttctgaggcatctcctgcaccaatcacctttg 516
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 667 ttttggaagcgaagggaagaccctcaacttctgaggtatctcctgcaccaatcacttttg 726

                                                                       
Query: 517 cttcccaggttcctttaccaagtgagaaactaaatctaatatagcatccaaacatctttt 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 cttcccaggttcctttaccaagtgagaaactaaatctaatatagcatccaaacatctttt 786

                                                                       
Query: 577 tctcactgtactttcttctttgcatgagcaaactcattctacaaagatcgttgagcctca 636
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tctcactgtactttcttctttgcatgagcaaactcattctacaaagatcgttgagcctca 846

                                                                
Query: 637 gttgtatgtcctattacccacagtacaggccacgaatatgtcaccacagcagg 689
           ||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 847 gttgtatgtcctattacccccagcacaggccacgaatatgtcaccacagcagg 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)