BAC Information

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BAC

Clone NameMSMg01-295L05
Chromosome3 (Build37)
Map Location 133,055,495 - 133,205,687
singlet/doubletdoublet
Overlap geneE130014J05Rik
Upstream geneEG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2
Downstream geneEG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295L05.T7 (MSMg01no295_l05.b1)MSMg01-295L05.TJ (MSMg01no295_l05.g1)
ACCAG423521AG423522
length738770
length of high quality
(start - end)
316 (50 - 365)290 (78 - 367)
definitionCHROMAT_FILE: MSMg01no295_l05.b1 PHD_FILE: MSMg01no295_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:42 2005CHROMAT_FILE: MSMg01no295_l05.g1 PHD_FILE: MSMg01no295_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,055,495 - 133,055,806)(133,205,399 - 133,205,687)
sequence
ATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGTTCTAGGGGGCAGTACCAAACACACACACCCCTATTCT
CACTTACAGGTTTTCACACTTTACTCTGTGAAGCTAATTTCTACTTTAGT
CTCAAATCAATATTTTCTTTATTGGTGAGAGCACTAGTGTTGTTGTCATT
GCAAAAACAAGGCAATGTCCCTTGCTTTGGGCATCATGAGAAGAAAGGTA
GTTGTCTTAGTTAGTGTTTTATTGTTCTCAAGAGACACCATGACCAAGGC
AACTCTTACAAAGGACAAATTTTAATTGGGGATGGGTTACAGGCTCAGAG
GTTCAGCCCATTATCTTTTTTACAGACCCCCGCCCGCATCCAGGCAGATG
TGGTACGGAAGGAGCTGACACCCCCACATCTTGACTAAAGGCTGCTAGGA
AGAGATTGGTCAAGCTCGCCCACATAGTAACAGACTTCCTCCAACAAAGC
CATACCTACCCAAACAAGGACACACCTCCTAATAATATCACACCCTGTGG
ACCAAGAATTAGAACATGTGCCTTCCAGCAAGTTGACTGACAACCTCTGC
TATTTAACTGATAAAAAAAAAAACTGGGGTGAGCCAGCCTAGTCTTCAGC
TGATTTATCAGATCATCACGGATCTGTATTTGTCATTCCTGGATCCAGAT
AACCCTGCTATTGACTTCCTGGAAGTGCCCGAACTGTA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGCAAAGAACCATCATAAGG
ATAAGATTACATGTACGGGAAGTTGGGATTCACAGAGAAAATATATTGGT
TTGGTTTAAGACTGTGGGTATTGTAGCCTAGCTAATGAAATCATTACATT
TGCATTTTAATGGAAAGTTGAAATACTGAAGAGGAGTTGCATTCTTCTCC
ATGTCTGTATGTGTGTTTTATAATGTGTTTTGAGTACAATATAAATTACA
ACATAATAAATATTATTTTTAAAAATTTTATTAAGCAGAACAGTGTTTGT
GAAAGATTGGGGCTTATTTTTAAGATCCCCACGCCCTTGATCTGATTACA
GGGTAGAGGGAAAGGTATGCCCCCCCATAAATCAAGTTTCCAAACCCTTA
GGAGTTCACTTTACAAGTCTTTCTGATTTGGTTCTCAGAAATGAGAACTG
TGGCTAAGTTTGCTTAACGCTTGCCACTATGGATTCATCTTCATGACCTG
ATTGCAAATCATTACTCATCCCCGATCCGAGCTGTTTTTTTGTCTCTGAA
TCTCGCCCCGATTCGTCCTTACGTTCAATCATCTTTTTTTTCCTCCCTCC
CATACACTGTCCTACCCGTTTGTTTCGATAAACCCTGCTCTTTTATCTTT
CTCCTTGTCTTTTCTTGCGATCTATATACCCTACGCTATATCTGTCCTTT
TCACCACATTCATAACTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_l05.b1 MSMg01no295_l05.b1 CHROMAT_FILE:
MSMg01no295_l05.b1 PHD_FILE: MSMg01no295_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:42 2005
         (316 letters)



>mm_chr3_133055291_133056006
          Length = 716

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagttctagggggcagtaccaaacacacacacccctattctcacttacaggttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagttctagggggcagtaccaaacacacacacccctattctcacttacaggttt 264

                                                                       
Query: 65  tcacactttactctgtgaagctaatttctactttagtctcaaatcaatattttctttatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcacactttactctgtgaagctaatttctactttagtctcaaatcaatattttctttatt 324

                                                                       
Query: 125 ggtgagagcactagtgttgttgtcattgcaaaaacaaggcaatgtcccttgctttgggca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtgagagcactagtgttgttgtcattgcaaaaacaaggcaatgtcccttgctttgggca 384

                                                                       
Query: 185 tcatgagaagaaaggtagttgtcttagttagtgttttattgttctcaagagacaccatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcatgagaagaaaggtagttgtcttagttagtgttttattgttctcaagagacaccatga 444

                                                                       
Query: 245 ccaaggcaactcttacaaaggacaaattttaattggggatgggttacaggctcagaggtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaaggcaactcttacaaaggacaaattttaattggggatgggttacaggctcagaggtt 504

                       
Query: 305 cagcccattatc 316
           ||| ||||||||
Sbjct: 505 cagtccattatc 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no295_l05.g1 MSMg01no295_l05.g1 CHROMAT_FILE:
MSMg01no295_l05.g1 PHD_FILE: MSMg01no295_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:42 2005
         (290 letters)



>mm_chr3_133205278_133205967
          Length = 690

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagcaaagaaccatcataaggataagattacatgtacgggaagttgggattcacagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atcagcaaagaaccatcataaggataagattacatgtacgggaagttgggattcacagag 351

                                                                       
Query: 61  aaaatatattggtttggtttaagactgtgggtattgtagcctagctaatgaaatcattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaaatatattggtttggtttaagactgtgggtattgtagcctagctaatgaaatcattac 291

                                                                       
Query: 121 atttgcattttaatggaaagttgaaatactgaagaggagttgcattcttctccatgtctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atttgcattttaatggaaagttgaaatactgaagaggagttgcattcttctccatgtctg 231

                                                                       
Query: 181 tatgtgtgttttataatgtgttttgagtacaatataaattacaacataataaatattatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tatgtgtgttttataatgtgttttgagtacaatataaattacaacataataaatattatt 171

                                                            
Query: 241 tttaaaaattttattaagcagaacagtgtttgtgaaagattggggctta 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tttaaaaattttattaagcagaacagtgtttgtgaaagattggggctta 122


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)