BAC Information

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BAC

Clone NameMSMg01-295O11
Chromosome3 (Build37)
Map Location 99,099,180 - 99,099,498
singlet/doubletsinglet
Overlap geneTbx15
Upstream geneHmgcs2, Phgdh, Zfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2
Downstream geneM6pr-ps, Spag17, LOC623045, Wdr3, Gdap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295O11.T7 (MSMg01no295_o11.b1)MSMg01-295O11.TJ (MSMg01no295_o11.g1)
ACCAG423661AG423662
length749751
length of high quality
(start - end)
323 (49 - 371)284 (79 - 362)
definitionCHROMAT_FILE: MSMg01no295_o11.b1 PHD_FILE: MSMg01no295_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:57 2005CHROMAT_FILE: MSMg01no295_o11.g1 PHD_FILE: MSMg01no295_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGGGGAAAATGATTTCCATGTGTTTCTAAAATGACTTAAAA
TTTTTGAGTGGTTGGTGGTCCACTAGTTCTAAATATCTGACCTGTCAAAA
TGCCATCTTTAAACTTCAGTGATGCATAGAGGCTTGGAATTAGCCAGGGT
TGGATTTATTATAGAACAAAGGGAGGCAATGAGTAACACGGCCATCTGAG
CAGGACTTGGGGCGGGTAATCCTTGAATGGATTAGATGCCATGATCCTAA
AACCACATTCTCTGAATGTTGGTTCCTTGCCCAGAAATGGGGAAAGGCCA
AACACTATTGTTTTTTAAATGACACGCCACCTATGAGGGACTCTGGTTAG
AGACAGTTGGTGGACACCCGGGGGACAGTCTTCTTTTCTCTTGTGGTTTA
TCATCACTGAGAGCCTAGAGACCCTCTGCATGCAGCAAGCCCCCAAACTG
ACAGCCTACACAATTAGTGGTATAAATGATCAGACTGCACCCCCACTTTT
TGGGTGGAAGACAGTGTATTAAAGTATAAGTGTGTAAAACTGTCTCTTAT
CGCTAAAAGAATTATCTTGAAACTATTATGGGACTCTACTAGAATACTTT
AAAAAGGGACATAGAAGCTGCTAANAAGATGAATTGAGTTATTATCACTG
TCTCATAAAGTCCATATATATATACATATATATATATATATCCTGAGCN
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAA
GATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGGG
GAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTATACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGA
TCCCGCAATACTTTTCTTGGGCACCACCTCCCGAAGATGTCCTAACTGGT
AAGAAGAACACATGCTCCACCATGTTCATAGAAACCTTGTTTATAATAGC
CAGAAGCTGGAAAGAACACAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAAATG
AATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTG
AGTGAAGTAACACATTCACAAAGGAACTCGCACAATATGTACTCACTGAT
ACGTGGATATTAGCCCAGATACTTAGGATACCCAAGATATAAGATACAAC
TTGCCAAACGCATGATATTCCAGAAGAACCAAGACCAAAGTGTGGACACT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_o11.b1 MSMg01no295_o11.b1 CHROMAT_FILE:
MSMg01no295_o11.b1 PHD_FILE: MSMg01no295_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:57 2005
         (323 letters)



>mm_chr3_99098976_99099698
          Length = 723

 Score =  594 bits (307), Expect = e-174
 Identities = 316/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttggggaaaatgatttccatgtgtttctaaaatgacttaaaatttttgagtggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttggggaaaatgatttccatgtgtttctaaaatgacttaaaatttttgagtggt 264

                                                                       
Query: 65  tggtggtccactagttctaaatatctgacctgtcaaaatgccatctttaaacttcagtga 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggtggtccactacttctaaatatctgacctgtcaaaatgccatctttaaacttcagtga 324

                                                                       
Query: 125 tgcatagaggcttggaattagccagggttggatttattatagaacaaagggaggcaatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcatagaggcttggaattagccagggttggatttattatagaacaaagggaggcaatga 384

                                                                       
Query: 185 gtaacacggccatctgagcaggacttggggcgggtaatccttgaatggattagatgccat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaacacggccatctgagcaggacttggggcgggtaatccttgaatggattagatgccat 444

                                                                       
Query: 245 gatcctaaaaccacattctctgaatgttggttccttgcccagaaatggggaaaggccaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatcctaaaaccacattctctgaatgttggttccttgcccagaaatggggaaaggccaaa 504

                              
Query: 305 cactattgttttttaaatg 323
           ||||||||  |||||||||
Sbjct: 505 cactattgccttttaaatg 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)