Query= MSMg01no297_f07.b1 MSMg01no297_f07.b1 CHROMAT_FILE:
MSMg01no297_f07.b1 PHD_FILE: MSMg01no297_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:45 2005
(557 letters)
>mm_chr3_44761668_44762622
Length = 955
Score = 1007 bits (521), Expect = 0.0
Identities = 548/557 (98%), Gaps = 2/557 (0%)
Strand = Plus / Minus
Query: 1 tctatctatcctatctggagcacactgaggtgtgtctgagcctgacaaacagctgaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tctatctatcctatctggagcacactgaggtgtgtctgagcctgacaaacagctgaatgt 696
Query: 61 gtcacagctcactggccctcttcctgagactcatcacaatattcagattcatccttgggt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 695 gtcacagctcactggccctcttcgtgagactcatcacaatattcagattcatccttgggt 636
Query: 121 cacattaaatgcttccctcttgtcgtcaattacattcttcttcctttttaactcatctaa 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 635 cacattaaatgcttccctcttgtcgtcaattacattcttcttccttttt-actcatctaa 577
Query: 181 actcttagtcatccgttctttctactaagcctttatagattctttaaaggacatgatctt 240
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 576 actcttagtcatccgttctttctactaagcctttatagactgtttaaaggacatgatctt 517
Query: 241 ggcgcttctctatatccctactcaacaagaactctagtatcccaaaggattctgctaccc 300
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ggcgcttctcta-agccctactcaacaagaactctagtatcccaaaggattctgctaccc 458
Query: 301 aagacaactgacaatagaagaggtctgctcgttgctgcaaccatagctctctcaagtatt 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 457 aagacaactgacaatagaagaggtctgctcgttgctgcaaccatagctttctcaagtatt 398
Query: 361 tgtgttaggaaaaataatggtttaaaaaaaaaggaataagctatttgaatttaaagagag 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tatgttaggaaaaataatggtttaaaaaaaaaggaataagctatttgaatttaaagagag 338
Query: 421 aagtcagaaatgttgaatacaagctgtgctttgagaagttttactctaaagaaaagaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aagtcagaaatgttgaatacaagctgtgctttgagaagttttactctaaagaaaagaaat 278
Query: 481 agttagagctattagaacggccttcatgttacatgaagacaaatttgccagaattgcttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agttagagctattagaacggccttcatgttacatgaagacaaatttgccagaattgcttt 218
Query: 541 tatagaaatttaactgg 557
|| ||||||||||||||
Sbjct: 217 taaagaaatttaactgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 955
Length adjustment: 10
Effective length of query: 547
Effective length of database: 945
Effective search space: 516915
Effective search space used: 516915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_f07.g1 MSMg01no297_f07.g1 CHROMAT_FILE:
MSMg01no297_f07.g1 PHD_FILE: MSMg01no297_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:45 2005
(342 letters)
>mm_chr3_44587606_44588349
Length = 744
Score = 619 bits (320), Expect = 0.0
Identities = 335/344 (97%), Gaps = 8/344 (2%)
Strand = Plus / Plus
Query: 1 ccatggtcgaaggactcagattaatagtcaccctgagaactaagttagttttcttagaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatggtcgaaggactcagattaatagtcaccctgagaactaagttagttttcttagaag 260
Query: 61 aggcctctttgtcatttggtaattgtctcttgaaacaatgaaaagcatttttgaatgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcctctttgtcatttggtaattgtctcttgaaacaatgaaaagcatttttgaatgtgt 320
Query: 121 gtgtgt--ctgtgagtctgtgtgtattgaaatggcataattatcatatgcatagacattg 178
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgtgtctgtgagtctgtgtgtattgaaatggcataattatcatatgcatagacattg 380
Query: 179 tgttcattactttgcatactttacatggagaaagtggtacaatactaattatagacctga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttcattactttgcatactttacatggagaaagtggtacaatactaattatagacctga 440
Query: 239 tactacactttctcacacacacacacacacacacacacacacacacacacacatatacat 298
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tactacac------acacacacacacacacacacacacacacacacacacacatacacat 494
Query: 299 ccatgtatatatacgtgagagaccaaactgtgggaaactaagcc 342
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ccatgtatatatacgtgagagaccaaactgtgggaaactaagcc 538
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 744
Length adjustment: 9
Effective length of query: 333
Effective length of database: 735
Effective search space: 244755
Effective search space used: 244755
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
