BAC Information

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BAC

Clone NameMSMg01-297L12
Chromosome3 (Build37)
Map Location 93,593,687 - 93,594,085
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563
Downstream geneTdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297L12.T7 (MSMg01no297_l12.b1)MSMg01-297L12.TJ (MSMg01no297_l12.g1)
ACCAG424966AG424967
length759766
length of high quality
(start - end)
98 (534 - 631)406 (184 - 589)
definitionCHROMAT_FILE: MSMg01no297_l12.b1 PHD_FILE: MSMg01no297_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:13 2005CHROMAT_FILE: MSMg01no297_l12.g1 PHD_FILE: MSMg01no297_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:13 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATGCGCGG
AATTCCAAGCTCTCTCCCTCAGAGTCCCTACATAAGGAATAACGATGAAA
TAGATTACGTGTAGAAAAATCTCAGAATTAACACGTCAAGTAAAAGCTCC
TCACAAATGAATCTACAGCGTTCACTTCAACATTTTTTTTTTTTTGGTTT
TTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCT
GTAAACCAGGCTGGCCTCAGACTCAGAAATTCACCTGCCTCTGCCTCCCA
AGTGCTGGGATTACAGGTATGAGCCATCTATCCCGGCCTGAGTGGACATT
CTTATTGTCATACATGATTCTATGGCAGTGTATCACCTGTATATAGATGG
TTCCATTAAAAAATGAGGAAAAACTTATAGGGACATTATGACTGAAATAG
TGTATGTTGTGTGTATGCATGTATACATATGTTCATGAAGGTTCACATAT
GTGTAGGTATATGTGCATGTGAAGGGCAGAGGTCAACCCTGGATGTCATT
TCTCAGGATCCAGTCACATTGTGTTGAGACAGGGGCTCACTGATCAGAAT
AGGCTAGCTGGCTGATAAGCCTCTGCAATTATAAAATTGCACCACCACAC
TTGTTTAAGGGCGGGTGTTTTGTTTTATTTTGCTTTGATTTGCTTTGTTT
TTACATGGGATCTGGGGATATTTTTTCCTTCCCACAGAGTTTCAATATGT
ATACCTGAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATAAGAGGGTGA
ACTATAGAAGGATTTCCGAAATTCCTCAGTTTTGTTTTAGGAATGACCAG
TTGCATTCTCTGGTATGAGGACTCTTCCCAGGGTATATTCCTCCGGTGTG
GTACAAAATTCTTTCAACTCTGGCAAGTCAACCATAAAATCTCTCCTCTC
CTCCACACCCCTGAAAAAAAAAAATACCTTGCCGGGAGTAGTGGCGCACA
CCTTTAATCCCAGCACTCGGGAGGCAGAGACAGGCATTTTTCTGAGTTCG
AGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTATGCAG
AGAAACCCTGTCTCAAAAAACAAAAACAAACAAACAAACAAAAAACAAAA
ACAAAACAACAACAACAACAACAAAAATACCTTACACATGTCCCACTCTG
TGACAGAGAATTCATGAGAAAAGTCTATGATTACTGCCCATGGGGTCTCA
GTTCTCCTGTTAGAGGCACCTTCCATCATACAGGAGCCTGCTCCTCAGAC
CTAAGAAAACAACAATTTAGAGCACCTTTCCATCAAAGGAAGGGTTGCAA
AGTGATCATTTACAAGCATTTCAAATGTCAGATTTAAAACAAGGGATCCT
CCTATGGAGGCCCCAAAAACACCATATACAGAATCCCTGATACTCACAGA
TTTGCAATAACTCTAACGGAGGAATAAATAATCAAAATCAATTGATTTAT
TTATGCTATGTTGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_l12.g1 MSMg01no297_l12.g1 CHROMAT_FILE:
MSMg01no297_l12.g1 PHD_FILE: MSMg01no297_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:13 2005
         (406 letters)



>mm_chr3_93593480_93594285
          Length = 806

 Score =  638 bits (330), Expect = 0.0
 Identities = 386/406 (95%), Gaps = 8/406 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   taaaatctctcctctcctccacacccctgaaaaaaaaaaataccttgccgggagtagtgg 61
           |||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| ||||
Sbjct: 208 taaaatctctcctctcctccacccccct-aaaaaaagaaataccttgccgggagtggtgg 266

                                                                       
Query: 62  cgcacacctttaatcccagcactcgggaggcagagacaggcatttttctgagttcgaggc 121
           | ||||||||||||||||||||||||||||||||| ||||||  ||||||||||| ||||
Sbjct: 267 cacacacctttaatcccagcactcgggaggcagaggcaggcagatttctgagttcaaggc 326

                                                                       
Query: 122 cagcctggtctacaaagtgagctccaggacagccagggctatgcagagaaaccctgtctc 181
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 327 cagcctggtctacaaagtgagctccaggacatccagggctatgcagagaaaccctgtctc 386

                                                                       
Query: 182 aaaaaacaaaaacaaacaaacaaacaaaaaacaaaaacaaaacaacaacaacaacaacaa 241
            |||||||||||||||  |||||| ||||||||||| |||  ||||||||||||||||||
Sbjct: 387 taaaaacaaaaacaaa--aacaaa-aaaaaacaaaa-caa--caacaacaacaacaacaa 440

                                                                       
Query: 242 aaa-taccttacacatgtcccactctgtgacagagaattcatgagaaaagtctatgatta 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaataccttacacatgtcccactctgtgacagagaattcatgagaaaagtctatgatta 500

                                                                       
Query: 301 ctgcccatggggtctcagttctcctgttagaggcaccttccatcatacaggagcctgctc 360
           ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 ctgcccacggggtctcagttctcctgttagaggcaacttccatcatacaggagcctgctc 560

                                                         
Query: 361 ctcagacctaagaaaacaacaatttagagcacctttccatcaaagg 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcagacctaagaaaacaacaatttagagcacctttccatcaaagg 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)