CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGATATTTACCAACAAAGCTTGAGAGTGTAAGGCCCCACAAACTT
GGACAAATATAACCATCTACATTGGAGCTTATAACTGATTTACCCTACAG
CAGTTAAAACAATGAATTGTCATGTAGCTATTTTCTTACATGTTTCCCCT
TTCAAAGTTTATTTAAAACTGTATTATCAGGGACAAAATATAAAAAGTTA
ATGTCAAAAGTTATATATTGTAGGAAAGAAATTAATTCTTATACATTACC
AAATGGAAGTCCTGAATGCTTATGCCCTTTCTGGGAAAGGTTATTTGTAA
TGACCAAATTCGTCACTGTTTGGAATCTTGGAAAGGTCACAGAGAGAAGG
TTTTCACTTGTTTTAAACCCCACTCTATATTTTAAAAATAAATATGCCTT
TCTTCCATTTCATAGAAATATCAACACTGTTTGCCCTATAATTTGCTTTT
TGATCCTCTGACATTTACCCAGCTGACTGTCTTTGGAGAACAATCTCTTG
ATGGAGAAGGCTTTAGGTAAGAAAACTGTCAATTACAAATTACTACTTGA
TGCATCTAAAGTGCAGACGTCTCTAGTTCTAAAGACCAACCTTGTTAAGT
ATTTCACAGCCTCTAACTCTAACTGAAGTCTACATGGTGCATCTATGCTG
TTGCAGATCAGCTTAACTAACAAN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAACTTCAGCAC
AGAGGCTTGATATAAAATTAACTCAAATCAGTAGCCGTTCTCTACTCAAA
GGACAAATAGGCTAAGAAAGAAATTACGAGAATGACACTATTCACAATAG
TCACAAACAATATAAAAACCTCAGTGTGACTCTAACCAAGCAACTGAAAG
AGCTGTATGACAAGAACTTCAAGGCTCTGAAGAAAGAAATCAAAGATTTC
AGAACATGGAAAGATATCCCATGCTCATGGATTGGCAGGATTAATATAGT
AAAAATGGCCATCTTGCCAAAGGCAATCTACAGATTCAGTTCAATCCCCA
TCAAAATTCCAATTCATCCCCCCATAGAGTTAGAAAGACCAATTTGCAGA
TTCATTTGGAGTAACAAAAACCCCAGGATAGTGAAACTATTCTTAATAAA
AGAACATCTGGGGGAATCACCATCCCTGACCTCAAGCTGTACTACAGAGC
AATAGCGATAGAAAACTGTATGGTATTGGTACAGAGACAGGCAGGTAGAT
CAATGAAATAGAACTGAAGACCCAGAAATGAACCCACATGCCTATGGTCA
TTTGATCTTTGAAAAAGGTGCTAAAACCATCCAGTGGGAAAAAGACAGCA
TTTTCAACAAATGTTGTTAGTTCAACTGGCAGTT

Query= MSMg01no297_n11.b1 MSMg01no297_n11.b1 CHROMAT_FILE:
MSMg01no297_n11.b1 PHD_FILE: MSMg01no297_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:22 2005
         (673 letters)



>mm_chr3_156064694_156065766
          Length = 1073

 Score = 1216 bits (629), Expect = 0.0
 Identities = 659/673 (97%), Gaps = 8/673 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgatatttaccaacaaagcttgagagtgtaaggccccacaaacttggacaaata 64
           |||||||||||| ||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgatatctatgagcaaagcttgagagtgtaaggccccacaaacttggacaaata 264

                                                                       
Query: 65  taaccatctacattggagcttataactgatttaccctacagcagttaaaacaatgaattg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaccatctacattggagcttataactgatttaccctacagcagttaaaacaatgaattg 324

                                                                       
Query: 125 tcatgtagctattttcttacatgtttcccctttcaaagtttatttaaaactgtattatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcatgtagctattttcttacatgtttcccctttcaaagtttatttaaaactgtattatca 384

                                                                       
Query: 185 gggacaaaatataaaaagttaatgtcaaaagttatatattgtaggaaagaaattaattct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggacaaaatataaaaagttaatgtcaaaagttatatattgtaggaaagaaattaattct 444

                                                                       
Query: 245 tatacattaccaaatggaagtcctgaatgcttatgccctttctgggaaaggttatttgta 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 tatacattaccaaatggaagtcctgaatgcttaggccctttctgggaaaggttatttgta 504

                                                                       
Query: 305 atgaccaaattcgtcactgtttggaatcttggaaaggtcacagagagaaggttttcactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgaccaaattcgtcactgtttggaatcttggaaaggtcacagagagaaggttttcactt 564

                                                                       
Query: 365 gttttaaacccc----actctatattttaaaaataaatatgcctttcttccatttcatag 420
           ||||||||        | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gttttaaa----taaaattctatattttaaaaataaatatgcctttcttccatttcatag 620

                                                                       
Query: 421 aaatatcaacactgtttgccctataatttgctttttgatcctctgacatttacccagctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatatcaacactgtttgccctataatttgctttttgatcctctgacatttacccagctg 680

                                                                       
Query: 481 actgtctttggagaacaatctcttgatggagaaggctttaggtaagaaaactgtcaatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgtctttggagaacaatctcttgatggagaaggctttaggtaagaaaactgtcaatta 740

                                                                       
Query: 541 caaattactacttgatgcatctaaagtgcagacgtctctagttctaaagaccaaccttgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaattactacttgatgcatctaaagtgcagacgtctctagttctaaagaccaaccttgt 800

                                                                       
Query: 601 taagtatttcacagcctctaactctaactgaagtctacatggtgcatctatgctgttgca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taagtatttcacagcctctaactctaactgaagtctacatggtgcatctatgctgttgca 860

                        
Query: 661 gatcagcttaact 673
           |||||||||||||
Sbjct: 861 gatcagcttaact 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)