Query= MSMg01no298_f22.b1 MSMg01no298_f22.b1 CHROMAT_FILE:
MSMg01no298_f22.b1 PHD_FILE: MSMg01no298_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:02 2005
(638 letters)
>mm_chr3_148479916_148480953
Length = 1038
Score = 1207 bits (624), Expect = 0.0
Identities = 633/636 (99%)
Strand = Plus / Plus
Query: 3 ggaattcctcagccgttctcttaaagacttgtcaccagctgcatctgtccttcccggacg 62
||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattccttagccgtactattaaagacttgtcaccagctgcatctgtccttcccggacg 262
Query: 63 tccccctcagggatgcacccttctttgttaatggggatgatgtaaccatcgctattgccc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tccccctcagggatgcacccttctttgttaatggggatgatgtaaccatcgctattgccc 322
Query: 123 ctgctgatctggtagcacatgtggagatggcggccagctccaaggttgggcatactttta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgctgatctggtagcacatgtggagatggcggccagctccaaggttgggcatactttta 382
Query: 183 tagtaaatgtcctcgttctcactcctcctggagggagacaggtcctctgccatgtctggg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tagtaaatgtcctcgttctcactcctcctggagggagacaggtcctctgccatgtctggg 442
Query: 243 ctgctctccgggtagggagagtctcttaggttgggcatgctcgtgtacagagagtctctg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgctctccgggtagggagagtctcttaggttgggcatgctcgtgtacagagagtctctg 502
Query: 303 ttgggggactggaggtggtcgtcggcctcggccgtcagctgggagacgtagctgtctgtt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttgggggactggaggtggtcgtcggcctcggccgtcagctgggagacgtagctgtctgtt 562
Query: 363 gcctccggcttcacttttttctggggttggtacagaagcgagtgagtccgctgggggatg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcctccggcttcacttttttctggggttggtacagaagcgagtgagtccgctgggggatg 622
Query: 423 agcggcgcctccagctctttgtggcggaactccagccctgggttgtcaccatgcatcaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agcggcgcctccagctctttgtggcggaactccagccctgggttgtcaccatgcatcaaa 682
Query: 483 gatgaggcgtcagccacaatcgcgtcatcttcactgctgctgccgccaatcaccggttta 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gatgaggcgtcagccacaatcgcgtcatcttcactgctgctgccgccaatcaccggttta 742
Query: 543 accgggagcttgagctccaagttgtgggttttgttgccgccccggaggttgttgtgcact 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 accgggagcttgagctccaagttgtgggttttgttgccgccccggaggttgttgtgcact 802
Query: 603 aactctgaaatgatcattttctcaaacgcggtgtcg 638
||||||||||||||||||||||||||||||||||||
Sbjct: 803 aactctgaaatgatcattttctcaaacgcggtgtcg 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_f22.g1 MSMg01no298_f22.g1 CHROMAT_FILE:
MSMg01no298_f22.g1 PHD_FILE: MSMg01no298_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:02 2005
(672 letters)
>mm_chr3_148639277_148640347
Length = 1071
Score = 1210 bits (626), Expect = 0.0
Identities = 660/672 (98%), Gaps = 3/672 (0%)
Strand = Plus / Minus
Query: 1 attccagaaaaactgtgaggcgaggcgctggggctgtcacagagtgcataccttctgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 870 attccagaaaaactgtgaggcgaggcgctggggctgtcacagagtgcatggcttctgtga 811
Query: 61 tgttattggaaaggcacagctagggtaagtgctacttggattgtcttaaatttaaacgta 120
|| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 810 tgctattggaaagacacagctagggtaagtgctacttggattgtcttaaattcaaacgta 751
Query: 121 ggccgtttatttcactgctgttttcccccctcagcctaatgaaatctgagtccattgcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ggccgtttatttcactgctgttttcccccctcagcctaatgaaatctgagtccattgcaa 691
Query: 181 aatgttttcaaaaatgttcttggagaaatactgctggttgctaactatactggggatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aatgttttcaaaaatgttcttggagaaatactgctggttgctaactatactggggatgat 631
Query: 241 tgtagaacgagtatatggctgccctttgcaatttgaagcagccctgacagtctttgaaaa 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tgtagaacgagtagatggctgccctttgcaatttgaagcagccctgacagtctttgaaaa 571
Query: 301 ttctcagataatcttatcatatattcttgaagaatatcaattcatgatgtataatacctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttctcagataatcttatcatatattcttgaagaatatcaattcatgatgtataatacctc 511
Query: 361 atgatcttttgcaaatttatgatttaagagtaaatatgtatgtatgggtcctgagtttac 420
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atgctcgtttgcaaatttatgatttaagagtaaatatgtatgtatgggtcctgagtttac 451
Query: 421 ttgagcagactggcttttttttttaaagtaagatatattatgaatagactcttacttaag 480
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttgagcagactggc--ttttttttaaagtaagatatattatgaatagactcttacttaag 393
Query: 481 aataatgctcacaaataaggaatgaatgagcataatgttgaagtaacttaataagggatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aataatgctcacaaataaggaatgaatgagcataatgttgaagtaacttaataagggatt 333
Query: 541 ataaaatttggaaggtatttattt-aaaaaaaactggttttggtcatccttaaatcatga 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 332 ataaaatttggaaggtatttatttaaaaaaaaactggttttggtcatccttaaatcatga 273
Query: 600 gtcaaaatattatgtcaagtactttgcataggggcagaaactaaactccaaatagtaatc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gtcaaaatattatgtcaagtactttgcataggggcagaaactaaactccaaatagtaatc 213
Query: 660 acaggcttgctg 671
|||| |||||||
Sbjct: 212 acagacttgctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
