BAC Information

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BAC

Clone NameMSMg01-298P02
Chromosome3 (Build37)
Map Location 37,300,460 - 37,486,438
singlet/doubletdoublet
Overlap geneFgf2, Nudt6, Spata5
Upstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, LOC100040649
Downstream geneLOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298P02.T7 (MSMg01no298_p02.b1)MSMg01-298P02.TJ (MSMg01no298_p02.g1)
ACCAG425853AG425854
length726722
length of high quality
(start - end)
374 (62 - 435)453 (57 - 509)
definitionCHROMAT_FILE: MSMg01no298_p02.b1 PHD_FILE: MSMg01no298_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:43 2005CHROMAT_FILE: MSMg01no298_p02.g1 PHD_FILE: MSMg01no298_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,486,065 - 37,486,438)(37,300,460 - 37,300,912)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTCA
GGTCCCGGCAGATTCCCATGATTCCGCTGGGTGAGCACTCACAGCTTGTT
TGTACGCTCACACCGCTTTGGGGACGGCTGTTCCTACTGTGTGTCACTGG
ATGTTGTTAGAGGCTTTGATGTTTTCTAAGGTTGCATAAAGTGCACTTTC
AAAGATAGAAAACAGAGGAAGAAAGTCTAACCAATACAAACATCAAAATA
ACATGACCTTTCTGCCATAAATTAGGGGGCCGGAGAAATGGCTTTCTACA
GCTGGGGTATTTGATGTGCTGAACTTGCTGGGTTGGCAGATTAATCGCAT
TTATACTGGGAAAGTATTCCAGGACATTAAAGGATTTATTTGTTTGCTAA
TCTGCTTCACGCCCCAGAGGCCTTGTTACAAAATAAGGGGGCGGAAGGAG
AAGAGAAGGGGCTGAAAGGAGGGGCTAGGAACAGGACAGGATTTCTTCCC
CGTTGGGCAGGCAGTTTTGTTAACCTAAAGAGGCCAGAGCTCTTCAACAC
CCCGGGAACCTCTGACAGAGCCTCCCTGTTTATGAGCCACAGAAGTTTGC
TTGTTTGCTCTTTCCACCGTATAAAGTTAACGTGGTCTTCCTCTGTAAAC
ACAGCAGGGTTCTTCCTTGTTTTAACCATCTAGGATTTGGAAGCGTTTGC
TTGACATACCCGCACATGGATAACAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACACAGAATTGTAGATTTAAACAAAATAGTATCTAGTGAGTTTA
ACTGTAGGTCTTGGTTTCAATACCAAACGACTGTGAAGGTAGAGCATGTA
CGGGAAAGTACTGATGAGCCCCCTCTGTGAAGGGGTCGCCCACCTGTGGT
TTCCTATCTGAGGCTACAGAATTGTGTCACCCTGGATGGGATTGAAGTAG
GACTCAAATGGTGCTTTTGTTGGCCCATGTAGTGAATGCTGAGCGGCTGT
GTTTTAATTCATCCAAAGCGTATTTCACACACAAAACAATTTCTGAGTTG
AGGAGTCTTAACAGTGACATGAGTTCTACAGTGTATAAAAGTAGGGAGGT
AGTGTTTTGGGGCTCAGTTTTGCAGTCTACACTGACCAAATTTGTCAGAA
ACAGAGAGCTAAAGAAAAAGCTGCATCTTTGTAAGGAGATAAAATGCTAG
CCCGGATTGAATGCAGAGTAAGGCCAATAAAGAATTACTGCTCTTGGAAG
CCATTCCCAGCAATTCTCTGCAGCCTTTTTATAACATTGAGACCACGCTG
GCTTTTAAAATTTTCCCATTTGTGGATTTTATTTAGTTCTAAAATGCTCA
ACATGGATACTTTCATCACATCTGTTTTTAATTCTCAAAATTGGTGTGAG
CAAATGCATTTCGAAATTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_p02.b1 MSMg01no298_p02.b1 CHROMAT_FILE:
MSMg01no298_p02.b1 PHD_FILE: MSMg01no298_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:43 2005
         (374 letters)



>mm_chr3_37485865_37486638
          Length = 774

 Score =  685 bits (354), Expect = 0.0
 Identities = 369/374 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcccatgattccgctgggtgagcactcacagcttgtttgtacgctcacaccgctttgg 60
           |||||||||||||||||||||||||||||||||||||||||||||| || |  |||||||
Sbjct: 574 attcccatgattccgctgggtgagcactcacagcttgtttgtacgcccagaaggctttgg 515

                                                                       
Query: 61  ggacggctgttcctactgtgtgtcactggatgttgttagaggctttgatgttttctaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggacggctgttcctactgtgtgtcactggatgttgttagaggctttgatgttttctaagg 455

                                                                       
Query: 121 ttgcataaagtgcactttcaaagatagaaaacagaggaagaaagtctaaccaatacaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttgcataaagtgcactttcaaagatagaaaacagaggaagaaagtctaaccaatacaaac 395

                                                                       
Query: 181 atcaaaataacatgacctttctgccataaattagggggccggagaaatggctttctacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atcaaaataacatgacctttctgccataaattagggggccggagaaatggctttctacag 335

                                                                       
Query: 241 ctggggtatttgatgtgctgaacttgctgggttggcagattaatcgcatttatactggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctggggtatttgatgtgctgaacttgctgggttggcagattaatcgcatttatactggga 275

                                                                       
Query: 301 aagtattccaggacattaaaggatttatttgtttgctaatctgcttcacgccccagaggc 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 274 aagtattccaggacattaaaggatttatttgtttgctaatctgcttcaggccccagaggc 215

                         
Query: 361 cttgttacaaaata 374
           ||||||||||||||
Sbjct: 214 cttgttacaaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no298_p02.g1 MSMg01no298_p02.g1 CHROMAT_FILE:
MSMg01no298_p02.g1 PHD_FILE: MSMg01no298_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:43 2005
         (453 letters)



>mm_chr3_37300260_37301112
          Length = 853

 Score =  868 bits (449), Expect = 0.0
 Identities = 452/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacagaattgtagatttaaacaaaatagtatctagtgagtttaactgtaggtcttggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacagaattgtagatttaaacaaaatagtatctagtgagtttaactgtaggtcttggtt 260

                                                                       
Query: 61  tcaataccaaacgactgtgaaggtagagcatgtacgggaaagtactgatgagccccctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaataccaaacgactgtgaaggtagagcatgtacgggaaagtactgatgagccccctct 320

                                                                       
Query: 121 gtgaaggggtcgcccacctgtggtttcctatctgaggctacagaattgtgtcaccctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaaggggtcgcccacctgtggtttcctatctgaggctacagaattgtgtcaccctgga 380

                                                                       
Query: 181 tgggattgaagtaggactcaaatggtgcttttgttggcccatgtagtgaatgctgagcgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggattgaagtaggactcaaatggtgcttttgttggcccatgtagtgaatgctgagcgg 440

                                                                       
Query: 241 ctgtgttttaattcatccaaagcgtatttcacacacaaaacaatttctgagttgaggagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtgttttaattcatccaaagcgtatttcacacacaaaacaatttctgagttgaggagt 500

                                                                       
Query: 301 cttaacagtgacatgagttctacagtgtataaaagtagggaggtagtgttttggggctca 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 cttaacagtgacatgagttctacagtgtagaaaagtagggaggtagtgttttggggctca 560

                                                                       
Query: 361 gttttgcagtctacactgaccaaatttgtcagaaacagagagctaaagaaaaagctgcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttttgcagtctacactgaccaaatttgtcagaaacagagagctaaagaaaaagctgcat 620

                                            
Query: 421 ctttgtaaggagataaaatgctagcccggattg 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 ctttgtaaggagataaaatgctagcccggattg 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)