BAC Information

Click to search

BAC

Clone NameMSMg01-299C19
Chromosome3 (Build37)
Map Location 88,496,280 - 88,496,905
singlet/doubletsinglet
Overlap gene2810403A07Rik
Upstream geneArhgef11, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4
Downstream geneRit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299C19.T7 (MSMg01no299_c19.b1)MSMg01-299C19.TJ (MSMg01no299_c19.g1)
ACCAG426021AG426022
length757825
length of high quality
(start - end)		647 (74 - 720)181 (78 - 258)
definitionCHROMAT_FILE: MSMg01no299_c19.b1 PHD_FILE: MSMg01no299_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:01 2005CHROMAT_FILE: MSMg01no299_c19.g1 PHD_FILE: MSMg01no299_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGA
ATTCCCTGAGCTCTCTCCTTAACCAACTTGGCCTACTTAACTTAATGAGT
TCAAGGCCCATAGAGAACCTGCCTTTAAAAATGTCTACTGGAACCAGGCA
TGGTACTACACACACTTAAATTCCAGCACTCAGGGGCCAAAGGCAGAAGG
ATCTCAACTTTGTGACCAACCTGGTCTACATACTATGTTCTAGGACAGCC
CAAACTCAATTCCTAGCAGTCTTAGCAGACTGTTCAAAACTTCCTATGAC
TTTGGTTAAAGAGAAACGGTCCTTCCTATTTGGTCACTATGGAGACTTAC
ACACATGTGGACATCGCACACAGTGATACACAAAGACAAGCAGGTAGGTA
CATACATACATACAAAACACACATTAAGAGCCAGGTCTGGTGGTTCAAAA
CTATAACCCTAGCCTGGCAGTGGTGGCACATGCCTTTAATCCCAGCACTT
GGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGCTCTACA
AAGTGAGTTCCAGAACAGCCAGAGCTACACAGAGAAACCCTGTCTCGATA
AAACCCCAAAAAACAAACACAAACAAACAAACTATAACCCTAGCACTCGA
AAGGCTGAGGTGAAAAGATCACCATCAGTTTGAGGCCAAAAGGGCAACAA
AGTGAACTCTATTTTTAATAATACTTAAGAAGCCTGGTAAAGGGGCTGGA
GAGATGG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCATACTCCTCCTGCCTCAGCC
TCTTAAGCTCTGGGAATTACAAGCTTGTGCTGCCAAAGCTAACTGGTACT
AGAAACTGAACATCAGGCCCAATCATGCTAGATGAGTGCTCTACAACTGA
ACCTTAGCTACAGCCCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTTTNTTNTTTTCNTTTTTNNTTTTTTTTTTTTTTNTTT
TTAACTTTTTTTCCCTNCNCCCTTTTTTTTTTTTTCCTTTTCCCCTTCCT
TTTTTTCTTTCCTTTTTTTTTATTTCTTACCTCCTTCCTTTTTTTTTTCC
CCCATTATCTTTTTTTCCACATTTCCCCCCCCCCTTCCTCTTTTTCATTT
TTTTCCCCCCCTTTTTTTTCTTTCTTCCCTCCACCTTCCCTTTTTCCCCC
TTTTTTTATTTTTTTTCCTTTTCCCCCTTTTCCCCTTTCTTCCCTTTTTC
TCCCCCCCCTTTTTAACATTTTATATTCCCCCTTTCCTCCATTTACTTTC
GCTACCCCTCCCTTTTTCCCTTTCTTCCTTCCCTTCTACCCCCCATACCT
CCCTTTTACCTTCTTTTCTCTTACCCTTCCTTTTCCATTCCTTTCCCTCC
CTTTTACTGCCCCCCCTTCCCCCCCCACCTTTTCTCCCCTCCCCTTACTT
TCTTTTCCCTCCTATTTCCTTCTTTCTCTCCCCCCTTATCTTGCCTTCCC
TTCCATCTTCCCCCTTCTTATTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_c19.b1 MSMg01no299_c19.b1 CHROMAT_FILE:
MSMg01no299_c19.b1 PHD_FILE: MSMg01no299_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:01 2005
         (647 letters)



>mm_chr3_88496174_88497220
          Length = 1047

 Score = 1069 bits (553), Expect = 0.0
 Identities = 599/627 (95%), Gaps = 22/627 (3%)
 Strand = Plus / Minus

                                                                       
Query: 33  gcccatagagaacctgcctttaaaaatgtctactggaaccaggcatggtactacacacac 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gcccatagagaacctgcctttaaaaatgtctactggaaccaggcatggtactacacacac 673

                                                                       
Query: 93  ttaaattccagcactcaggggccaaaggcagaaggatctcaactttgtgaccaacctggt 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ttaaattccagcactcaggggccaaaggcagaaggatctcaactttgtgaccaacctggt 613

                                                                       
Query: 153 ctacatactatgttctaggacagcccaaactcaattcctagcagtcttagcagactgttc 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ctacatactatgttctaggacagcccaaactcaattcctagcagtcttagcagactgttc 553

                                                                       
Query: 213 aaaacttcctatgactttggttaaagagaaacggtccttcctatttggtcactatggaga 272
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 552 aaaacttcctatgactttggttaaagagaaacggtccatcctatttggtcactatggaga 493

                                                                       
Query: 273 cttacacacatgtggacatc-gcacacagtgatacacaaagacaagcaggtaggtacata 331
           |||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct: 492 cttacacacatgtggacatcag-acacagtgatacacaaagacaagcaagtaggtacata 434

                                                                       
Query: 332 catacatacaaaacacacattaagagccaggtctggtggttcaaaactataaccctagcc 391
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 catacatacaaaatacaaattaagagccaggtctggtggttcaaaactataaccctagcc 374

                                                                       
Query: 392 tggcagtggtggcacatgcctttaatcccagcacttgggaggcagaggcaggcggatttc 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tggcagtggtggcacatgcctttaatcccagcacttgggaggcagaggcaggcggatttc 314

                                                                       
Query: 452 tgagttcaaggccagcctgctctacaaagtgagttccagaacagccagagctacacagag 511
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgagtttgaggccagcctgctctacaaagtgagttccagaacagccagagctacacagag 254

                                                                       
Query: 512 aaaccctgtctcgataaaaccccaaaaaacaaac--------------------acaaac 551
           ||||||||||||||||||||||||||||||||||                    ||||||
Sbjct: 253 aaaccctgtctcgataaaaccccaaaaaacaaacaaaacaaaaaacaaacacaaacaaac 194

                                                                       
Query: 552 aaacaaactataaccctagcactcgaaaggctgaggtgaaaagatcaccatcagtttgag 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaacaaactataaccctagcactcgaaaggctgaggtgaaaagatcaccatcagtttgag 134

                                      
Query: 612 gccaaaagggcaacaaagtgaactcta 638
           |||||||||||||||||||||||||||
Sbjct: 133 gccaaaagggcaacaaagtgaactcta 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |