BAC Information

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BAC

Clone NameMSMg01-299F13
Chromosome3 (Build37)
Map Location 40,521,925 - 40,742,385
singlet/doubletdoublet
Overlap geneSlc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
Upstream geneLOC100041443, LOC100041458, LOC100040882, Intu
Downstream geneLarp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299F13.T7 (MSMg01no299_f13.b1)MSMg01-299F13.TJ (MSMg01no299_f13.g1)
ACCAG426147AG426148
length758758
length of high quality
(start - end)
319 (41 - 359)287 (69 - 355)
definitionCHROMAT_FILE: MSMg01no299_f13.b1 PHD_FILE: MSMg01no299_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:15 2005CHROMAT_FILE: MSMg01no299_f13.g1 PHD_FILE: MSMg01no299_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,521,925 - 40,522,236)(40,742,099 - 40,742,385)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTATGTTAAATAACAAAACAAGTCTTAAGGAGACTGAAATATTAAATACC
TTTGCTGACTAGAATGGAATGGCTTAAACATAAGAGGATGAAAGTGCAAT
ATTGTAAAATCTTAAATTAGTAACATAATTGAAACTTCTATTGACTGTTA
GCCTTCCTTGGGTTGTTTAGTTTCATGTTTAATGTAGTGTTGGATGAGTA
GTTATATAAATTCAGGGTCACTATTCTGCCTGAGCAGTCTGCCTCCCATT
CTCCTTTTGCTTATATTTGCCTATCATATTTTTATAAGTTCTACATGCAC
TACATGTTCNTTTTTGAATCCCCCCCCCCATATTATCCACCCCAAGTCAG
TAATCTGCCTTCTTTTTTATTCATGAAAAAAATAATAGATTTACTAGAAT
TTAAGATTCAGGTTATAAGTCTTTATGTTATGTGCCATGTTTGGTTGACT
GATAAGAAGAAGTAGAGCTTCACTTGAGTTTGATCAGGCAGAAGGGGTGA
TGACTGGCACTTGGACTTGAGCAGATGGCCTCTCAAGGGACCAAACCACA
TACCTGCCCTTTCTCTCCAGGATCACCTCCTGTGGGAGTCGTCTTCTTAC
CTCCTTTTCATGGGTGTATTTTGTATAAGCAGCCTTCTTCAATACTGCTT
CCCTATTTTAGGTAACATATATGGTTGTAATATAAGGTTAAAACCCTAGT
GATTCTTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGGCCTGCTGACACCTTGAGGTTTTGTTTGC
AATATGTTTACTATCTCTAATGTAATCACATCCGAGTTAAACACCGAGAA
TCACGTGTCAGGATGACTGTTCTCCTGAGATCACATGGTGCAAAGCGGGC
TCTGAAGAGATAGTGATATTGTGTTAGAGCCTTCCTTCCTTATTTCTTCC
TTACCATGTGAGTACAATATCTAAGGGCAAACAAAATTGGCTCAAATTCA
GACACATGAATCAAATAAAACATGCTTCTGGTAGTTGGAATGATACCTCT
TTACAAATCTTTTTTAAACACACCACAACAAAACAAAACTAAATAAAATA
AAACAAAAAAAACCAACCACAAAGCAAATACTTTCTAAAATAGATTTTTA
TTAGGAAATATAAAATTTGGCAAATATTTTAAAAATTGTTATATTGTTAA
TATTTTAATAGAGAAAGCACCACATTAAAATACATTGATAAAATGATATA
CTTTCAACATTGGTAAATTATGAAGTCTAACTACAGAACTACTTCTTCAG
GGTCTTTAGGGCTGAGTCGTAAATATAGAGTAGTAGCTACATATAAGAAT
GCCCACTCTTATGTACACCAAATAAAATTGGGTCAAACTGGCCCATGGTG
AGCTCCTTGCCACTCTGCTCTGAATGAATCCGTAGTATTTCCTAGACCTA
ATCCACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_f13.b1 MSMg01no299_f13.b1 CHROMAT_FILE:
MSMg01no299_f13.b1 PHD_FILE: MSMg01no299_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:15 2005
         (319 letters)



>mm_chr3_40521721_40522439
          Length = 719

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatgttaaataacaaaacaagtcttaaggagactgaaatattaaatacctttg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatgttaaataacaaaacaagtcttaaggagactgaaatattaaatacctttg 264

                                                                       
Query: 65  ctgactagaatggaatggcttaaacataagaggatgaaagtgcaatattgtaaaatctta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgactagaatggaatggcttaaacataagaggatgaaagtgcaatattgtaaaatctta 324

                                                                       
Query: 125 aattagtaacataattgaaacttctattgactgttagccttccttgggttgtttagtttc 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 aattagtaacataattgaaacttctattgactattagccttccttgggttgtttagtttc 384

                                                                       
Query: 185 atgtttaatgtagtgttggatgagtagttatataaattcagggtcactattctgcctgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtttaatgtagtgttggatgagtagttatataaattcagggtcactattctgcctgag 444

                                                                       
Query: 245 cagtctgcctcccattctccttttgcttatatttgcctatcatatttttataagttctac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagtctgcctcccattctccttttgcttatatttgcctatcatatttttataagttctac 504

                       
Query: 305 atgcactacatg 316
           ||||||||||||
Sbjct: 505 atgcactacatg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no299_f13.g1 MSMg01no299_f13.g1 CHROMAT_FILE:
MSMg01no299_f13.g1 PHD_FILE: MSMg01no299_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:15 2005
         (287 letters)



>mm_chr3_40741899_40742585
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggcctgctgacaccttgaggttttgtttgcaatatgtttactatctctaatgtaatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttggcctgctgacaccttgaggttttgtttgcaatatgtttactatctctaatgtaatca 428

                                                                       
Query: 61  catccgagttaaacaccgagaatcacgtgtcaggatgactgttctcctgagatcacatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 catccgagttaaacaccgagaatcacgtgtcaggatgactgttctcctgagatcacatgg 368

                                                                       
Query: 121 tgcaaagcgggctctgaagagatagtgatattgtgttagagccttccttccttatttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgcaaagcgggctctgaagagatagtgatattgtgttagagccttccttccttatttctt 308

                                                                       
Query: 181 ccttaccatgtgagtacaatatctaagggcaaacaaaattggctcaaattcagacacatg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccttaccatatgagtacaatatctaagggcaaacaaaattggctcaaattcagacacatg 248

                                                          
Query: 241 aatcaaataaaacatgcttctggtagttggaatgatacctctttaca 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aatcaaataaaacatgcttctggtagttggaatgatacctctttaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)