Query= MSMg01no300_e09.b1 MSMg01no300_e09.b1 CHROMAT_FILE:
MSMg01no300_e09.b1 PHD_FILE: MSMg01no300_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:23 2005
(508 letters)
>mm_chr3_66173472_66174379
Length = 908
Score = 826 bits (427), Expect = 0.0
Identities = 491/527 (93%), Gaps = 27/527 (5%)
Strand = Plus / Minus
Query: 1 actccttcttagaattatgagaatccccattaacactctataatttactatatcatgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 actccttcttagaattatgagaatccccattaacactctataatttactatatcatgtcc 701
Query: 61 tgattagtacactatattttagatagttatatttaaatattttggagacatgatctcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tgattagtacactatattttagatagttatatttaaatattttggagacatgatctcata 641
Query: 121 tatcccagggtagccttgagttcacagtgcagtaaagggtgactttgaacttctaatctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tatcccagggtagccttgagttcacagtgcagtaaagggtgactttgaacttctaatctt 581
Query: 181 tccgcctttactgtcctagaactgggattattagtgcatgcacagtttatttggttttaa 240
|||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 580 tccgcctttactgtccaagaactgggattattaatgcgtgcacagtttatttggttttaa 521
Query: 241 attttatatttgttacacagacatttatacttatttatagctaattctgccaagctttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 attttatatttgttacacagacatttatacttatttatagctaattctgccaagctttct 461
Query: 301 ttttctatacatttcctttaatatgacatgtactaagatttaaatatttaaatatttaaa 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 460 atttctatacatttcctttaatatgacatgtactaag--------atttaaatatttaaa 409
Query: 361 tcc-tttccaggtgaaattg--------aatat---tt-------aaattagattgggat 401
||| ||||||||| |||||| ||||| || |||||||||||||||
Sbjct: 408 tccttttccaggtaaaattgaacatttaaatatcacttaactacaaaattagattgggat 349
Query: 402 tagcaaataggaatctattacacagactcacttctggagccacttttaggaatgggaacc 461
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct: 348 tagcaaataggaatctattacaaagactcatttctggagccacttttaggaatgggagcc 289
Query: 462 tcatcacctccccaaaggattgcttccatgaagtttccttctccaaa 508
|||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 288 tcatcacctccccaaagggttgcttccatgaagtttccttctccaaa 242
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no300_e09.g1 MSMg01no300_e09.g1 CHROMAT_FILE:
MSMg01no300_e09.g1 PHD_FILE: MSMg01no300_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:23 2005
(656 letters)
>mm_chr3_65997452_65998507
Length = 1056
Score = 1237 bits (640), Expect = 0.0
Identities = 652/656 (99%)
Strand = Plus / Plus
Query: 1 ccccctcgaaggagaagaaaatcaacgaagttttttatttttaaaccaagtatggcttag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ccccctcgaaggagaagaaaatcaacgaagttttttatttttaaagcaagtatggcttag 260
Query: 61 acatatttaaggccagaactttctaagtctttctcaaaaacttgtttgaacaaaaatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatatttaaggccagaactttctaagtctttctcaaaaacttgtttgaacaaaaatgat 320
Query: 121 ttaggatttaaaatactaaccagagatcgaaaggtagcttaactacctgtgggatttgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaggatttaaaatactaaccagagatcgaaaggtagcttaactacctgtgggatttgaa 380
Query: 181 agaatagtgtactgtgcaaattaagtcttcatttttgattgattttaaaggggaacaaga 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 agaatagtgtactgtgcaaattaagtcttcatttttggttgattttaaaggggaacaaga 440
Query: 241 catggtctttcatcaaataaccttttccaatttgtaattattttccctgaaatagaactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catggtctttcatcaaataaccttttccaatttgtaattattttccctgaaatagaactc 500
Query: 301 aatatggccatgtttctgcctcacaacccccaaccccttcttgttcggggtgggagtcta 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatatggccatgtttctgtctcacaacccccaaccccttcttgttcggggtgggagtcta 560
Query: 361 ctcacaggcatcttttcattactttggtccctccaaacgcttacggatcctaaaccttag 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 ctcacaggcatcttttcattactttggtccctccaaacgcttacagatcctaaaccttag 620
Query: 421 agaaggccatctaatttgagcttcaaacatagtgttctgattgataacagatttaaggat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaaggccatctaatttgagcttcaaacatagtgttctgattgataacagatttaaggat 680
Query: 481 tctatagttcagatttactctctaaaaactgggggcttgggaatgtagcctctgaaagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctatagttcagatttactctctaaaaactgggggcttgggaatgtagcctctgaaagat 740
Query: 541 agaccttttgtgtggacccggaatgtattccactaggccagagtttcctctcccacacac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaccttttgtgtggacccggaatgtattccactaggccagagtttcctctcccacacac 800
Query: 601 agctcagggtcccctctcatgtaaatgacctctcattggctatcctgaacaatggg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agctcagggtcccctctcatgtaaatgacctctcattggctatcctgaacaatggg 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
