BAC Information

Click to search

BAC

Clone NameMSMg01-301K16
Chromosome3 (Build37)
Map Location 127,922,328 - 127,922,619
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneEG668828, LOC100043393, EG668831, Pitx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-301K16.T7 (MSMg01no301_k16.b1)MSMg01-301K16.TJ (MSMg01no301_k16.g1)
ACCAG427796AG427797
length737742
length of high quality
(start - end)		600 (47 - 646)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no301_k16.b1 PHD_FILE: MSMg01no301_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:07 2005CHROMAT_FILE: MSMg01no301_k16.g1 PHD_FILE: MSMg01no301_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAAAGAGAGACCTCCTAATGGCCAATAAATATTTGAAATGGTG
TTGGGCATTCAAACCTGACAGAGAAATGCACATGAGCACCACATTGAGAT
TTCGTCTTAGCCTAACTGAATGGCAATCATCAAGGAAATAAATGCTGATG
AGCCTATGCTGAAAGGAACCCGGAGACATCATGGTCAAGAATGTAACCTG
AGATGATCATGATGGAAGTCAGTGTGAGGGTTCAAAAGCCAAAAGCACTG
AAAACAAAACTACCATAGAAGCCAGTGAAACCACCCCTGGGTATGTCCAA
AGGAGATAAGTCAACATGTCACTGAGATATTTACAATTCTTACTTATTAC
TGTACTATTCAAAATAGCTAACGAATGAAGCTGATCTTGATGCCCTTCAA
CAAAAGAATAAAGTGCAGTACATGCATGCATTGAGTATCCACTGTCAGCT
GCAAAGAAAAATAAAATCATGATGTTTTCAGGAAAATGCATTCAACTGAA
GACAATTTTGTTCTCCAAAATAAGCCAGAGTCAGAAAGACAGGATATTTT
GTCACATTCAGACTCTAGAGCTAAATGTGATGTGATGTTATGTGATGTGA
TGTGATGTGATGTGAGTGTNNTNATTTTCNNTTTCTTTTTGTTTTCTTGC
TTCTCGCTTTTTTTTCTCCCTTTCTCCTTTTTTCCTT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATCAGTTGTTTTAGAGG
GATGAAGTCATATGGCTCAGGACTCTTAAATATAAGAGGTTATAAACATA
ATGAGGTAGATATAAATTTATTGGTCAGGTAGGAAGTTTAAATGGTTTTA
ATAATACAAAAATGTGGAATATTACAATAAAATGTATGTATATTTATATA
TATAAAGAAATTTTAAAACTCAAGAAAATTTATTTTTGTATCTGTAATAC
TAAGTGAAAGATTAAATTATCCACTGGGTATGCACTTAATATGTATGAGT
AAGATTTTATTAGTCATATTATTGTCACCACGCCACGAAAATAGAAGGCT
ACATGCTATATTTTAACATTAACCCTTTTAAAAGATATTTTCTTTTATTA
CATTTCAAATGCTATTCCAAAAGTTCCCTGTACCCGCCCCCTGCCCTGCT
CCCCTACCCACCCACTCCCACTTCTTGGCACTGGAATTTCCCTGTATTGG
AGCATATAATGTTTGCAATACCAAGGGGCCTCTCTTCCCAATGATGGTCG
ACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACATGAGCTCTGTGGG
CACTGGTTAGTTCATATTGTAGCCCCACCTATTTGTTTGCAGACCCCTTC
TGCTCCTTGAGTCTTTTCTCTAGCCCCTCCATTGGTGGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no301_k16.g1 MSMg01no301_k16.g1 CHROMAT_FILE:
MSMg01no301_k16.g1 PHD_FILE: MSMg01no301_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:07 2005
         (292 letters)



>mm_chr3_127922128_127922819
          Length = 692

 Score =  518 bits (268), Expect = e-151
 Identities = 286/292 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaagaatcagttgttttagagggatgaagtcatatggctcaggactcttaaatataag 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 agtaagaatcagttgttttagagggatgaagccatatggctcaggactcttaaatataag 260

                                                                       
Query: 61  aggttataaacataatgaggtagatataaatttattggtcaggtaggaagtttaaatggt 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggttataaacataatgagggagatataaatttattggtcaggtaggaagtttaaatggt 320

                                                                       
Query: 121 tttaataatacaaaaatgtggaatattacaataaaatgtatgtatatttatatatataaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tttaataatacaaaaatgtggaatattacaataaaatgtatgtatatttatatatacaaa 380

                                                                       
Query: 181 gaaattttaaaactcaagaaaatttatttttgtatctgtaatactaagtgaaagattaaa 240
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| 
Sbjct: 381 gaaattttaaaactcaagaaaatttatttttgtgtctgtaatactaagtgaaaggttaag 440

                                                               
Query: 241 ttatccactgggtatgcacttaatatgtatgagtaagattttattagtcata 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatccactgggtatgcacttaatatgtatgagtaagattttattagtcata 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |