CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTTATACCTGAAAGACCTGCAGGCTTTTCGCCCCCTTTCTTAAA
TCCATTTCCCCGTTGAGATGAAAAATGTAATACTTTTCAGCTTACTTTAG
ACTTTCTTCAAAAGTATTTCTGGAAAAGGATCCTTCATGTGGAGCATATG
AAAACTGTCAGAGCATAGGAGAGAGCGAGGTTTGAAAACCATGCTAATGG
ACGGCCATTATGCCGCAGGGAGTTCCCCAAGAGCAGAGAAACACAAGCAG
AGAATGCAGGGGGCAGGGAGGGGTGGGCACAGAACCTGTATGAAAGACAG
GGGCCCAGTCCACGACTAAAGAAGTGTGAGCAAAGTGAGATGAGAAATAA
CGGCCGAGTTCTACCTGGCAGAATGCTTAAAATGTTAGTTGTAGAGTCTG
ATGGCTGGCATTCAAGTGTCTCTTCCTCCTGCCTTAAGATGTCAGGTGAC
CCAGTGTCCTCCCCGGTAAATGGGTAAATGGCTGCTAACTGACCTCCTCA
TAGAGGGCTTGCCCTAATTAAGAGATCGTGCATGTGGAATGTATAACTTA
TTCTCTGGTACGCACAGAGCGGTCCGTAGTCCCAGCTGGGTGGCTGTTAT
CTCTAACGGGACAGGGTAGCATCACATCTCTGTATCTGTTTGAGGGCCAC
TTAAGCGCATCACCAAGACTTCTTGCCGGTATCTCGACCTGTGGAGGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCTGAAAACTTTGGCTCTCCCATATAA
AGATAGATGGTCCCTGATGCTCCAGCACTATGAGAAAGGGGAGGTGGTAG
GGGGAGGGAGGNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTTTTTTTTTNNNNNNNNNNNTNNNNNNNNNNNNNNTTTTTTTT
TTTCCCCCCGGCGCCCCCCGGNNNNNNNGGNNGNNGGGGNGGGGGGNNGG
GNNNAAAAAAAAAAAAAAAAAAAGGTGGGGGGGGGGGGGGGGNNNNNNGN
NNNNNNNNNNNNNNGNGNNNGGGGGGGGGGGGGGGGGGNGGGGGGNGGGG
GGGCCCCCTCGGCCCCCCCACCTTTTTTTCCCTTCCTTCCCCCCCTCTTC
TTCTCCCTTCCCTTTCCCCCCCCCCTCTTTTTCTCCTCGCCCTTCCTCTT
TCCCCCTCCTTTCCTCCTCCGCTTTTTCCTTTCCTTTCCCTTTTTTCCTC
CCCCTTTTTTTCCTTCTTCCCTTCTTTTCTTTTCCCCCTTCTCCTTTTTC
TTCCCCTTTTTCCCCGCTTCTTTTCTCTCCCCCTTTTCCCTTCCTTCT

Query= MSMg01no302_f08.b1 MSMg01no302_f08.b1 CHROMAT_FILE:
MSMg01no302_f08.b1 PHD_FILE: MSMg01no302_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:57 2005
         (699 letters)



>mm_chr3_143992705_143993804
          Length = 1100

 Score = 1307 bits (676), Expect = 0.0
 Identities = 691/698 (98%), Gaps = 5/698 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttt---atacctgaaagacctgcaggcttttcgccccctttcttaaatccat 61
           |||||||||||   ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 gaattctttttaaaat--ctgaaagacctgcaggcttttcgccccctttcttaaatccat 843

                                                                       
Query: 62  ttccccgttgagatgaaaaatgtaatacttttcagcttactttagactttcttcaaaagt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 ttccccgttgagatgaaaaatgtaatacttttcagcttactttagactttcttcaaaagt 783

                                                                       
Query: 122 atttctggaaaaggatccttcatgtggagcatatgaaaactgtcagagcataggagagag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 atttctggaaaaggatccttcatgtggagcatatgaaaactgtcagagcataggagagag 723

                                                                       
Query: 182 cgaggtttgaaaaccatgctaatggacggccattatgccgcagggagttccccaagagca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cgaggtttgaaaaccatgctaatggacggccattatgccgcagggagttccccaagagca 663

                                                                       
Query: 242 gagaaacacaagcagagaatgcagggggcagggaggggtgggcacagaacctgtatgaaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gagaaacacaagcagagaatgcagggggcagggaggggtgggcacagaacctgtatgaaa 603

                                                                       
Query: 302 gacaggggcccagtccacgactaaagaagtgtgagcaaagtgagatgagaaataacggcc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gacaggggcccagtccacgactaaagaagtgtgagcaaagtgagatgagaaataacggcc 543

                                                                       
Query: 362 gagttctacctggcagaatgcttaaaatgttagttgtagagtctgatggctggcattcaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gagttctacctggcagaatgcttaaaatgttagttgtagagtctgatggctggcattcaa 483

                                                                       
Query: 422 gtgtctcttcctcctgccttaagatgtcaggtgacccagtgtcctccccggtaaatgggt 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtgtctcttcctcctgccttaagatgtcaggtgacccagtgtcctccccggtaaatgggt 423

                                                                       
Query: 482 aaatggctgctaactgacctcctcatagagggcttgccctaattaagagatcgtgcatgt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aaatggctgctaactgacctcctcatagagggcttgccctaattaagagatcgtgcatgt 363

                                                                       
Query: 542 ggaatgtataacttattctctggtacgcacagagcggtccgtagtcccagctgggtggct 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggaatgtataacttattctctggtacgcacagagcggtccgtagtcccagctgggtggct 303

                                                                       
Query: 602 gttatctctaacgggacagggtagcatcacatctctgtatctgtttgagggccacttaag 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gttatctctaacgggacagggtagcatcacatctctgtatctgtttgagggccacttaag 243

                                                 
Query: 662 cgcatcaccaagacttcttgccggtatctcgacctgtg 699
           | ||||||||||||||||||||||||| ||||||||||
Sbjct: 242 ctcatcaccaagacttcttgccggtatttcgacctgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1100
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1090
Effective search space:   751010
Effective search space used:   751010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)