Query= MSMg01no302_j05.b1 MSMg01no302_j05.b1 CHROMAT_FILE:
MSMg01no302_j05.b1 PHD_FILE: MSMg01no302_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:14 2005
(277 letters)
>mm_chr3_27487930_27488608
Length = 679
Score = 439 bits (227), Expect = e-128
Identities = 256/275 (93%), Gaps = 16/275 (5%)
Strand = Plus / Minus
Query: 5 gaattccttccctagcaggataggaaacaaccacagaaggcgggtccctgaagagagcaa 64
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 374 gaattccttccctagcaggataggcaacaaccacagaaggcgggtccctgaagagagcaa 315
Query: 65 atcaaggagctgatactgttgtagaaaggac--agaatgcaggagtgaagaagaccacca 122
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 314 atcaaggagctgatactgttgtagaaaggacagagaatgcaggagtgaagaagaccacca 255
Query: 123 ggctgatgactgcctttgggctttgaaaagcaaccactggagagccgtggggggttgggg 182
|||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 254 ggctgatgactgcctttgggcttttaaaagcaaccactggagagccgt------------ 207
Query: 183 ggggtgagtcagcctggccaggtgtgcaggcggcacccgggatgtttgttaagacaccaa 242
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 206 --ggtgagtcagcctggccaggtgtgcaggcggcacctgggatgtttgttaagacaccaa 149
Query: 243 gaggccacccctggtcaggaagctcttgtgtcctc 277
|||||||||||||||||||||||||||||||||||
Sbjct: 148 gaggccacccctggtcaggaagctcttgtgtcctc 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 679
Length adjustment: 9
Effective length of query: 268
Effective length of database: 670
Effective search space: 179560
Effective search space used: 179560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no302_j05.g1 MSMg01no302_j05.g1 CHROMAT_FILE:
MSMg01no302_j05.g1 PHD_FILE: MSMg01no302_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:14 2005
(476 letters)
>mm_chr3_27331718_27332593
Length = 876
Score = 536 bits (277), Expect = e-156
Identities = 277/277 (100%)
Strand = Plus / Plus
Query: 183 gtgctgctcctgtaatatttaggctcactacagtcactcatggatattaaccgctcagca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gtgctgctcctgtaatatttaggctcactacagtcactcatggatattaaccgctcagca 334
Query: 243 tgagtaacctgctggcctagcatggcctgtagttcacagaaggcctcagtggtaccctgc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgagtaacctgctggcctagcatggcctgtagttcacagaaggcctcagtggtaccctgc 394
Query: 303 aaaacaggtttcacaacagcagcagctgctcccagagcaggcacagctgtatttattaac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaaacaggtttcacaacagcagcagctgctcccagagcaggcacagctgtatttattaac 454
Query: 363 actaggtcaccatcagctttcctcaaattccctctttcccctgagctccatggaaggagg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 actaggtcaccatcagctttcctcaaattccctctttcccctgagctccatggaaggagg 514
Query: 423 atgtctgtgcatttgtgcttgtgtgtgtgtgtgtgtg 459
|||||||||||||||||||||||||||||||||||||
Sbjct: 515 atgtctgtgcatttgtgcttgtgtgtgtgtgtgtgtg 551
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
