BAC Information

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BAC

Clone NameMSMg01-303B04
Chromosome3 (Build37)
Map Location 123,390,072 - 123,563,036
singlet/doubletdoublet
Overlap genenone
Upstream genePde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303B04.T7 (MSMg01no303_b04.b1)MSMg01-303B04.TJ (MSMg01no303_b04.g1)
ACCAG428768AG428769
length742737
length of high quality
(start - end)		696 (47 - 742)592 (77 - 668)
definitionCHROMAT_FILE: MSMg01no303_b04.b1 PHD_FILE: MSMg01no303_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:53 2005CHROMAT_FILE: MSMg01no303_b04.g1 PHD_FILE: MSMg01no303_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,562,382 - 123,563,036)(123,390,072 - 123,390,661)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGTAGAAGGAGGGGGTACCAACCCACCCATAAAACCTTCTACC
CCAAATTTGTCCTGTCTATAAGATGTGCAGAAATAAAGATGGAGCAGAGA
TTGAGGGAATGGCCAACCAACTTGAAACCCATCCCATGTGAGATGCCAGC
CCCTGACACTATTAATGATCCTCTGTTATGAATGCAGTAAGCCTTGGAGA
CAACAATTATATCAGGCAAATGAAAGTTACTTTTACATCCTTGTTGTAAC
TATCAGTGCAGTTATTTGAAGAAATGACAAAAAGCTCTAGGTTTTAGGAC
AAACTTAAAAACTCACAATGCCCTAATAATTGTTCTACCATTCTGTAATG
AACTAGACAGTCTTTTCAAATATCTCCTGTTCTTGTGTACAACTAAGCTA
ATGCTCCAATGATCAGGGCCATGTGAAAACCTAGGTACCAGTAAAACAGC
CATGTGACACCCTAAATAAGGGTCCCACCACAAGCCTCTGGAATCAACCT
GCTATAGATACTGAAACCCAGAGAAGAGCCTGTTTTCTGACTTTTCAAAA
ACCAGCTGAAATCATGCAAATTATCCTGCATCACCAGGTGGAAGGTTTTG
AGGAAATCAGGAGTCTAAGAAAGGAGAAAAAAAGTTAAAACGGGGGAAAC
ACAAGCACCTGCACTGGCGAAAACCTTTTAACTACCAGAGTN

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGAATCCACTGCTAGCCAGGGG
TGTACTTACATAGTTAATCTCTTAGTGACTCGATTTCCCTGTTGGACATG
GGAGTAGTACCTAGATGAAATGAGTTGAGTGAGTTTTTCTATGTGAAGAG
TCTCAATAGTAATGGTATAAGATAAATAACTGTTAACTGTTATTTTAACT
GCTGACAGCTCTAGAAAATAATGCTACAACAAGTTAAGTGTTACTCTCTG
ATGGCTTTTCATAGGGATTTCTAAAATTCTGGACAAATGACCAGAGAAAG
GGCTCTGAGATCATCACAAGGGTGACGAAACTCATCCTAGACCCAGCAAG
GGCCTCCTGGGCACTTTGTCATGGCAGAGTCAGGCCTGGAATCCAGGCTA
CTTAGACATTTATATGTACTGTGATTAAACAAAAGGATTAACACTTGGCA
TATACTTAAAATGAACTCCATAACGGAGCAATAGTTATAACTGAGGTCTA
TGATGGAGGATGGAGAATGATTAAACTGGTTTAGTAACAGGTACACAATA
GTTAGAGCACTCAGTGATTTAAGAAATGTACTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTCTTCTTCCCTTTCACCTTCTTTTTTTTATTATTT
TTTCACTCTTCCTTTTTTCCCCCTTCCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_b04.b1 MSMg01no303_b04.b1 CHROMAT_FILE:
MSMg01no303_b04.b1 PHD_FILE: MSMg01no303_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:53 2005
         (696 letters)



>mm_chr3_123561941_123563036
          Length = 1096

 Score = 1228 bits (635), Expect = 0.0
 Identities = 650/655 (99%)
 Strand = Plus / Minus

                                                                        
Query: 41   taaaaccttctaccccaaatttgtcctgtctataagatgtgcagaaataaagatggagca 100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 taaaaccttctaccccaaatttgtcctgtctataagatgtgcagaaataaagatggagca 1037

                                                                        
Query: 101  gagattgagggaatggccaaccaacttgaaacccatcccatgtgagatgccagcccctga 160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 gagattgagggaatggccaaccaacttgaaacccatcccatgtgagatgccagcccctga 977

                                                                        
Query: 161  cactattaatgatcctctgttatgaatgcagtaagccttggagacaacaattatatcagg 220
            |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 976  cactattaatgatcttctgttatgaatgcagtaagccttggaaacaacaattatatcagg 917

                                                                        
Query: 221  caaatgaaagttacttttacatccttgttgtaactatcagtgcagttatttgaagaaatg 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  caaatgaaagttacttttacatccttgttgtaactatcagtgcagttatttgaagaaatg 857

                                                                        
Query: 281  acaaaaagctctaggttttaggacaaacttaaaaactcacaatgccctaataattgttct 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  acaaaaagctctaggttttaggacaaacttaaaaactcacaatgccctaataattgttct 797

                                                                        
Query: 341  accattctgtaatgaactagacagtcttttcaaatatctcctgttcttgtgtacaactaa 400
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  accattctgtaatgaactcgacagtcttttcaaatatctcctgttcttgtgtacaactaa 737

                                                                        
Query: 401  gctaatgctccaatgatcagggccatgtgaaaacctaggtaccagtaaaacagccatgtg 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  gctaatgctccaatgatcagggccatgtgaaaacctaggtaccagtaaaacagccatgtg 677

                                                                        
Query: 461  acaccctaaataagggtcccaccacaagcctctggaatcaacctgctatagatactgaaa 520
            ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  acaccctaagtgagggtcccaccacaagcctctggaatcaacctgctatagatactgaaa 617

                                                                        
Query: 521  cccagagaagagcctgttttctgacttttcaaaaaccagctgaaatcatgcaaattatcc 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  cccagagaagagcctgttttctgacttttcaaaaaccagctgaaatcatgcaaattatcc 557

                                                                        
Query: 581  tgcatcaccaggtggaaggttttgaggaaatcaggagtctaagaaaggagaaaaaaagtt 640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  tgcatcaccaggtggaaggttttgaggaaatcaggagtctaagaaaggagaaaaaaagtt 497

                                                                   
Query: 641  aaaacgggggaaacacaagcacctgcactggcgaaaaccttttaactaccagagt 695
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  aaaacgggggaaacacaagcacctgcactggcgaaaaccttttaactaccagagt 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no303_b04.g1 MSMg01no303_b04.g1 CHROMAT_FILE:
MSMg01no303_b04.g1 PHD_FILE: MSMg01no303_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:53 2005
         (592 letters)



>mm_chr3_123389872_123390863
          Length = 992

 Score = 1118 bits (578), Expect = 0.0
 Identities = 587/590 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaatccactgctagccaggggtgtacttacatagttaatctcttagtgactcgattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgaatccactgctagccaggggtgtacttacatagttaatctcttagtgactcgattt 260

                                                                       
Query: 61  ccctgttggacatgggagtagtacctagatgaaatgagttgagtgagtttttctatgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ccctgttggacatgggagtagtacctagatgaaatgagttgagtgagattttctatgtga 320

                                                                       
Query: 121 agagtctcaatagtaatggtataagataaataactgttaactgttattttaactgctgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtctcaatagtaatggtataagataaataactgttaactgttattttaactgctgac 380

                                                                       
Query: 181 agctctagaaaataatgctacaacaagttaagtgttactctctgatggcttttcataggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctctagaaaataatgctacaacaagttaagtgttactctctgatggcttttcataggg 440

                                                                       
Query: 241 atttctaaaattctggacaaatgaccagagaaagggctctgagatcatcacaagggtgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttctaaaattctggacaaatgaccagagaaagggctctgagatcatcacaagggtgac 500

                                                                       
Query: 301 gaaactcatcctagacccagcaagggcctcctgggcactttgtcatggcagagtcaggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaactcatcctagacccagcaagggcctcctgggcactttgtcatggcagagtcaggcc 560

                                                                       
Query: 361 tggaatccaggctacttagacatttatatgtactgtgattaaacaaaaggattaacactt 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggaatccaggctacttagacctttatatgtactgtgattaaacaaaaggattaacactt 620

                                                                       
Query: 421 ggcatatacttaaaatgaactccataacggagcaatagttataactgaggtctatgatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcatatacttaaaatgaactccataacggagcaatagttataactgaggtctatgatgg 680

                                                                       
Query: 481 aggatggagaatgattaaactggtttagtaacaggtacacaatagttagagcactcagtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggatggagaatgattaaactggtttagtaacaggtacacaatagttagagcactcagtg 740

                                                             
Query: 541 atttaagaaatgtactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 590
           |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 atttaagaaatgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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