BAC Information

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BAC

Clone NameMSMg01-303J11
Chromosome3 (Build37)
Map Location 116,087,951 - 116,088,309
singlet/doubletsinglet
Overlap geneCdc14a
Upstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88
Downstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303J11.T7 (MSMg01no303_j11.b1)MSMg01-303J11.TJ (MSMg01no303_j11.g1)
ACCAG429143AG429144
length741741
length of high quality
(start - end)
520 (41 - 560)345 (70 - 414)
definitionCHROMAT_FILE: MSMg01no303_j11.b1 PHD_FILE: MSMg01no303_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:32 2005CHROMAT_FILE: MSMg01no303_j11.g1 PHD_FILE: MSMg01no303_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAAAAAGCTACACTAAATCTACCATATGAGCCTGCCGTACTACTTGTTG
GCATCTGCCCAAAGGAGCCGCACATCCCACTTCCCAGATACTTGCCTGGC
ATGGTTCCTGCTGACTGCTGCTGTTCACAATAGCTGGGAAATGGAAACAA
CCCAAATGTCCTTCAGCTGGCGAAAGGACAAGGGAAATGTGACATAATGC
ACACCTGGAATACTGTGCAGCAGCAAAAAGAAATGAAACCATGGACTTTG
CAGGTGAGTGGGTGGAACTAGAGCCAGAAGGACAGACAGACATCATGCTC
TCCAGGTGAGTGGGTGGAACTAGACCCAGAAAGACAGACATCATACCATG
CTCTCCTTGTTCCGAGGCTCCAAGCCCCAATTCTTTAGATGTGAGCACAT
ATTCTGGAAAACTACAGAAACACACACTACAGAAAGGGACCATTGCTAGG
GCGGTAGAGTCAGGAACAACAGAGAGAACAGCAGGGCACACGGGAACTGA
TAGGGAAAACTGGAAAGATGAGGGGCATGAACTAGGGAGGTGGGAAGAAG
ATAAATACTAAAGTAAGAGAGAGATACAGTAAAATTAATGAGGTCTAAAA
AGGGCACAACGAATGATACTATTAACTACCTACCTACACAATCTCTAAAC
AAAATAAACTCTGTAATATACTAAGTCTGTGTATAAACAAT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGGCAGCTCGGGCTAAAGAGAGAGCTCTA
GACCATGGTGAGCTACAGAACACCCAATCTCAAAAGCAAAAATAATGAAG
TGATAGTCTTTAGCAATTAAATTTCCAAAACTGTAAGGTTCACACCCAGT
AAATAAGCCTGGAGGAACAGAAAGACAGGCTTTTGTGTCGGAGCTTGAGC
TTGGGACCTGAGTTCAACCCCTGGAGAGGAGAGAACAAAGTCCCACCTGT
TGTCCTCCGACCTCTATACTCAGGCTGCTGTGGCACACACATCTACACAC
ACACACACTCACACGCACACACATACACACAAACTCACAGACTCACACAC
ACATACACACTCACACACACATACACACACACTCACACACACATACACAC
ACACTCACACACACATACACACACTCACTCACGCACACGCACATGCATAC
ACTCATGCACATGTACACACTCACACACATATAAATATAAAAATTTAACA
CATGTATAAATTTTTAAACTCTACATAATGCCAACTGTACAAACTGGTTT
AAGTACTACAGGCCTTGAACTGGTTCAAGGCTCCACAGGTTTTTAACACG
ATCCTTTAGTAAATAAAAAAGTAAGATAGAACACCAACAATAAAAAAAAA
AACCTATTGATCCCACCTCTAGCACTATACAGACTAATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_j11.g1 MSMg01no303_j11.g1 CHROMAT_FILE:
MSMg01no303_j11.g1 PHD_FILE: MSMg01no303_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:32 2005
         (345 letters)



>mm_chr3_116087751_116088495
          Length = 745

 Score =  590 bits (305), Expect = e-173
 Identities = 340/361 (94%), Gaps = 18/361 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggcagctcgggctaaagagagagctctagaccatggtgagctacagaacacccaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggcagctcgggctaaagagagagctctagaccatggtgagctacagaacacccaatc 260

                                                                       
Query: 61  tcaaaagcaaaaataatgaagtgatagtctttagcaattaaatttccaaaactgtaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaaagcaaaaataatgaagtgatagtctttagcaattaaatttccaaaactgtaaggt 320

                                                                       
Query: 121 tcacacccagtaaataagcctggaggaacagaaagacaggcttttgtgtcggagcttgag 180
           ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 321 tcacacccagtaaataagcctggaggaacagaaagacgggctcttgtgtcggagcttgag 380

                                                                       
Query: 181 cttgggacctgagttcaacccctggagaggagagaacaaagtcccacctgttgtcctccg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgggacctgagttcaacccctggagaggagagaacaaagtcccacctgttgtcctccg 440

                                                                       
Query: 241 acctctatactcaggctgctgtggcacacacatctacacacacacacactcacacgcaca 300
           |||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||
Sbjct: 441 acctctatactcaggctgctatggcacacacatctacacacacacac--tcacacgcaca 498

                                                                       
Query: 301 cacatacacaca-a-------------actcacagactcacacacaca--tacacactca 344
           |||||||||||| |             |||||||||||||||||||||  ||||||||||
Sbjct: 499 cacatacacacacacacatacacacacactcacagactcacacacacacatacacactca 558

            
Query: 345 c 345
           |
Sbjct: 559 c 559


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)