BAC Information

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BAC

Clone NameMSMg01-304F03
Chromosome3 (Build37)
Map Location 7,709,888 - 7,710,288
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr289-ps1, EG667801, Pkia, LOC667807, 3110050N22Rik, Il7
Downstream geneLOC620822, LOC633072, LOC545500, LOC620966, Stmn2, Hey1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-304F03.T7 (MSMg01no304_f03.b1)MSMg01-304F03.TJ (MSMg01no304_f03.g1)
ACCAG429641AG429642
length1,3441,324
length of high quality
(start - end)		735 (97 - 831)810 (92 - 901)
definitionCHROMAT_FILE: MSMg01no304_f03.b1 PHD_FILE: MSMg01no304_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:48 2005CHROMAT_FILE: MSMg01no304_f03.g1 PHD_FILE: MSMg01no304_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:42:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCCCAAACANNNNNNNNNCCAATGGGCGCTAXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCACCTGAGGAATACCCCAGTGATGACAAGCACC
TTAAAAAGTGTTCAACATCCTTAACCTTCAACGAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCATACCAGTCAAAATGGCTAAGATAAAAAATTC
AGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGAAACACTCCTCT
ATTGCTGGTGGAATTGCAAGCTGGTACAACCACTCTGGAAATCAGTCTGG
CAGTTCCTCAGAAAATTGGACATAGTACTACCGGAAGATTCAGCAATTCT
TCTGGACATATACCCAGAAGATATTCCAACTTGTAATAAGAACACATGCT
CCACTATGTTCATAGCAGTCTTATTTATAATAGTAAGAATCTGGAAAGAA
CCCAGATGTCCCTCAACAAAGGAATGGATACAGAAAATGTGGTACATTTA
CACAATGGAGTACTTCTCAGCAATTAAAAACAATGAATTCATGAAATTCT
TAGGCAAATGGATGCATCTGGAGGATATCATCCTGAGTGAGGTAACCCAA
TCACAAAAGAACACACATGACATGCACTCACTGAAAACTGTGTATTAGCC
CAGAAACTTAGAATATCTAAGATACAATTTGCAAAACACATGTAACACAA
GAATAGTGAAGACCAAAGTGTGGCTACTTTGCGCCTTCTTAGAATGGGGA
ACAAAATACCCATGGAAGGAGGTATACAGACAAAGTTCAGAGTTGAGAGA
GAAGAAACGACCATCAAGAAACCATTCCACCCAGGGGATCCATCCCATAT
ACAACCACCAAAACCCGACACTACTTGTCAGCATATGCCAGCAAGAATTT
GTTGACAGGACACTGATATAGCTGTCTCTTGTGAGGCTATGCCAGGGCCC
GGCNAAAACCAAGGGGAAGCTCATAACCCTCATTGGAGGAAAAACAGGGC
CCCTATGAAGGAGCTAAAAAAACACCCCCCCACTTAAAGGGGCTGCCCCC
CTATAGAGGAAAAAAATATGATTAACTATATTCCCCCCAACGGGCCCTTT
TTTGTTTTTAGAAAAAAATGCCTAAATAACCCTCTCCAAAAAAGACCTGC
CCTTGTAAACTATATCTCCCCTCGAATGACAGCCTAGATTCTTGGGGGGC
TTGATTATCTTANCACAATTCATTTCTTTCTATNTATTACTTAATTGCAT
CCTTTTATATAAACCATAAACATACTATCGTCCTTTCTTTANCTATCTAC
TATCTTCACTTATACCCTCTTTCTTCTTTCTACTCTGCACTTTT

NCCCGATCTTTNNNNNNTTGATGGCAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAGTTCCGTTCTGAGCC
CCATTTTTTAATGGGGTTGCTTTATTTTCTGAAGTCCACCTTCTTGAGTT
CTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAG
ATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTCTTATTGACGGTGTCTTT
TGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCG
ATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTG
CCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGT
CTCTGGTTTTATGTGAAGTTCTTTGATCCATTTAGATTTGACCTTAGTAC
AAGGAGATAAGTATGGATCGATTCGCATTCTTCTACATGATAACAACCAG
TCAGTTTAGTCTACACTGAGTTCTAAGCCAGCCAAGTTGTATAGCAGGAT
CGTGTCTTTAAAAAGAAAACAGAAAAAGAAAACAAAGAAGAAAAGTAAAT
AATCCTTTCTGTTTATAAATGAGTAAATTAAATTTCTCCTTTGAAAGAAA
TAATCTACAAGAAACGGATCTCTTCTTTGTGTTGTCAAGTACAGCTGAGG
TAAGGGTGAGAGAGGTCACTTCAGGAGAGTGATTTCAGGAGGAAAAGCAG
AGTGAGGTGTTAAGAGCAAAGGTACAAATGTCCTGGGGTTTCTTCTCCTC
AGCATCATTACTCCTGATGCCACCTCTCACTGCCTCAGTTCCTCCTGTGT
TCTCATTTTTTCACTTACTTTTTACCCCTTGTTCTTCTGGACAGAATCCC
AGGCTCTCAGTTATCAAGAAAGGGGTATAAAGGCACATAGAACAAGCTGA
GAACTGAAGTCCTTGGGGTTGAAGTAATTCAGGACTTGCTCTTTCCCCCG
GTTCCCAATCCAATTATCCAAAAGGCTTCTGTTACTGCCTTATGAGGGTG
TTTTTTAATGGGCCTCCCCAGGGTTCTTCTTAAATCCCGGGCTTTTTTAC
CCTAACCCAACCCCTTTTTGGATTTATAATTTTTCAAACCGGAGAGACAA
AGGCTCCCCAAAAAAAGGAATTTTTTTTCTATAGCCCCTCGAGGGGCCGC
TTACCTCTTGTGAATATTCTCCCACAACCACCAGGCTGTGTCTAAAAAAA
CATCTTTGTCCCTTGAACTCGTTACACTTTATTGCCGGGATGCATTCCCT
GAAATGGATTTGTTTATAAAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no304_f03.g1 MSMg01no304_f03.g1 CHROMAT_FILE:
MSMg01no304_f03.g1 PHD_FILE: MSMg01no304_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:42:48 2005
         (810 letters)



>mm_chr3_7709278_7710488
          Length = 1211

 Score =  729 bits (377), Expect = 0.0
 Identities = 395/401 (98%), Gaps = 1/401 (0%)
 Strand = Plus / Minus

                                                                        
Query: 411  cagtttagtctacactgagttctaagccagccaagttgtatagcaggatcgtgtctttaa 470
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1011 cagtttagtctacactgagttctaagccagccaagttgcatagcaggatcgtgtctttaa 952

                                                                        
Query: 471  aaagaaaacagaaaaagaaaacaaagaagaaaagtaaataatcctttctgtttataaatg 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951  aaagaaaacagaaaaagaaaacaaagaagaaaagtaaataatcctttctgtttataaatg 892

                                                                        
Query: 531  agtaaattaaatttct-cctttgaaagaaataatctacaagaaacggatctcttctttgt 589
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  agtaaattaaatttctccctttgaaagaaataatctacaagaaacggatctcttctttgt 832

                                                                        
Query: 590  gttgtcaagtacagctgaggtaagggtgagagaggtcacttcaggagagtgatttcagga 649
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 831  gttgtcaagtacagctgaggtgagggtgagagaggtcacttcaggagagtgatttcagga 772

                                                                        
Query: 650  ggaaaagcagagtgaggtgttaagagcaaaggtacaaatgtcctggggtttcttctcctc 709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  ggaaaagcagagtgaggtgttaagagcaaaggtacaaatgtcctggggtttcttctcctc 712

                                                                        
Query: 710  agcatcattactcctgatgccacctctcactgcctcagttcctcctgtgttctcattttt 769
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 711  agcatcattactcctgatgccacctctcactgcctcagctcctcctgtgttctcattttt 652

                                                     
Query: 770  tcacttactttttaccccttgttcttctggacagaatccca 810
            |||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 651  tcacttactttttaacccttgttcctctggacagaatccca 611


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 810
Length of database: 1211
Length adjustment: 10
Effective length of query: 800
Effective length of database: 1201
Effective search space:   960800
Effective search space used:   960800
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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