Query= MSMg01no306_l08.b1 MSMg01no306_l08.b1 CHROMAT_FILE:
MSMg01no306_l08.b1 PHD_FILE: MSMg01no306_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:34 2005
(664 letters)
>mm_chr3_57935201_57936264
Length = 1064
Score = 969 bits (501), Expect = 0.0
Identities = 534/545 (97%), Gaps = 1/545 (0%)
Strand = Plus / Minus
Query: 1 agggggccctgtgtgatcaacagatgaatgcctccaggagcataacactgacctcggtgg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agggggccctgtgtgatcaacagatgaatgcctccaggagcataacactgacctcggtga 486
Query: 61 ggtaaaaccttccttttttcaaggaatgctctcatttctttccatattaaggatttttag 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 485 ggtaaaaccttccttttttcaaggaatgcgctcatttctttccatattaaggatttttag 426
Query: 121 aaataacacgtattttagtttcacaagcatttggaaacgttaagtgacttctcagacatc 180
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 425 aaataacacgtattttagtttcacatgcatttggaaccgttaagtgacttctcagacatc 366
Query: 181 cgagggactggagcacagtgaattctgagaattgagagatggaagagcttggcttcctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 365 cgagggactggagcacagtgaattctgagaattgagagatggaagagcttgtctttctga 306
Query: 241 ggagctaaaaatatgtgcgactttctcatgacttcctacagcagctggtcaaatctatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ggagctaaaaatatgtgcgactttctcatgacttcctacagcagctggtcaaatctatta 246
Query: 301 atcattttatggttacagagaaacaagacttgggttcttcaagagcagtggttctcaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atcattttatggttacagagaaacaagacttgggttcttcaagagcagtggttctcaacc 186
Query: 361 tgtgggtcataaccactttgaggatcaagcaactttttcatggggttacctaaaaatgca 420
||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct: 185 tgtgggtcataaccactttgaggatcaagcagctttttcacagggttacctaaaactgca 126
Query: 421 ggagagcatagatatttatattatagttcataactgcagcaaaattacagctgtgaagta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggagagcatagatatttatattatagttcataactgcagcaaaattacagctgtgaagta 66
Query: 481 accagaaaataatttaatggttggggtcactgtaaga-ccccctttcggggacccctact 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 65 accagaaaataatttaatggttggggtcactgtaagacccccctttcggggacccctact 6
Query: 540 ctagt 544
|||||
Sbjct: 5 ctagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no306_l08.g1 MSMg01no306_l08.g1 CHROMAT_FILE:
MSMg01no306_l08.g1 PHD_FILE: MSMg01no306_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:34 2005
(611 letters)
>mm_chr3_57879815_57880825
Length = 1011
Score = 1102 bits (570), Expect = 0.0
Identities = 599/612 (97%), Gaps = 7/612 (1%)
Strand = Plus / Plus
Query: 1 tacattattcatttattattattgttgttgttttgagacaagatgtctgtaactttgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacattattcatttattattattgttgttgttttgagacaagatgtctgtaactttgaac 260
Query: 61 agttcttttgtttaattaaacttggaataggatttcaagtgtggctgttttggggcaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttcttttgtttaattaaacttggaataggatttcaagtgtggctgttttggggcaccc 320
Query: 121 tactttctcacactcaataaactcattggttcccaaaggtaaatgatcaggtgaaactga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactttctcacactcaataaactcattggttcccaaaggtaaatgatcaggtgaaactga 380
Query: 181 actttggtcattgggaccttatgaaaagggaacaggcatttcttagttcccagctccagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttggtcattgggaccttatgaaaagggaacaggcatttcttagttcccagctccagg 440
Query: 241 gagaaaattctcaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagatacctttacttg 300
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 441 gagaaaattctcaccaaaaaaaaaaaaaaaaaaaaaaaaa------gatacatttacttg 494
Query: 301 tttatgttattatgtctcatggtactatgaaagggaactagtaaatgagaaaaagtacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttatgttattatgtctcatggtactatgaaagggaactagtaaatgagaaaaagtacta 554
Query: 361 gatggggtaaatatagaaattttttaataaagagggacttttatatatgaagataaatat 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gatggagtaaatatagaaattttttaataaagagggacttttatatatgaagataaatat 614
Query: 421 agttggatgtttccaaaatggaaaagactagagagtttttgcaagttataaagttctaag 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 615 agttggatgtttccaaaatggaaaagactagagagtttttgcaagttatgaaggtctaag 674
Query: 481 taagttatttaaggtacatagaggatgagatttaa-gtttgctagcccaaagagtaacaa 539
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 675 taagttatttaaggtacatagaggatgagacttaaagtttgctagcccaaagagtaacaa 734
Query: 540 ttacaaggactggctaatgtgtatgtctaatcaaagtttacttggaagtgtctggccatt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 735 ttacaaggactggctaatgtgtatgtctaatcaaagtttacttggaagtgtctggtcatt 794
Query: 600 ggaatattatac 611
||||||||||||
Sbjct: 795 ggaatattatac 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
