Query= MSMg01no306_l16.b1 MSMg01no306_l16.b1 CHROMAT_FILE:
MSMg01no306_l16.b1 PHD_FILE: MSMg01no306_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:36 2005
(707 letters)
>mm_chr3_137683461_137684566
Length = 1106
Score = 1036 bits (536), Expect = 0.0
Identities = 601/632 (95%), Gaps = 16/632 (2%)
Strand = Plus / Minus
Query: 5 gaattcagctctatctccaccttcgctcattaaagattcacaaatgtggtcgtataatgg 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 616 gaattcagctctatgtccaccttcgctcattaaagattcacaaatgtggtcgtataacgg 557
Query: 65 aagtacacagaaaatcctaaaaacgatgctgtccagctacttgtttctgttctatcttcc 124
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 556 aagtacacagaaaatcctaaaaacgatgctgtccagttacttgtttctgttctatcttcc 497
Query: 125 aatgcccaggatacagaaaaagagggcgctcctggataacacagagaagggagtggacaa 184
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aatgcccaggacgcagaaaaagagggcgctcctggataacacagagaagggagtggacaa 437
Query: 185 aaaacatcaggcgaagctaaaaaaatcatcatcaaagatcatgcttagtacacagctttg 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaaacatcaggcgaagct-aaaaaatcatcatcaaagatcatgcttagtacacagctttg 378
Query: 245 ctttaaaaccaacctgactgtacccaatggtcttccgacatctgtattaagtgggaaaga 304
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 377 ctttaaaaccaacctgactgtacccaatggccttccgacatctgtattaagtgggaaaga 318
Query: 305 taaccaaaattaaatgattttaattagaacaagttatttaagtgatttcctttcaattcc 364
||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 317 taaccaaaattaaatgactttaattggaacaagttatttaagtgacttcctttcaattcc 258
Query: 365 atagtggaactttaaagcaatgccaatttttttaatttaagaaaattaagttttaataat 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atagtggaactttaaagcaatgccaatttttttaatttaagaaaattaagttt------- 205
Query: 425 aataataataataataataataatataggcacttcctgccagtatgtaaatggttaataa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 --------taataataataataatataggcacttcctgccagtatgtaaatggttaataa 153
Query: 485 acatatgaaaagaaatagaatttcttcaggaaactatcaatttgaatcatgattctatta 544
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 152 acatatggaaagaaatagaatttcttcaggaagctatcaatttgaatcatgattctatta 93
Query: 545 atacatttataatgactaaaatgtgacaggcaataccaagtgctgacaaggttgtagaca 604
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
Sbjct: 92 atacatttataatgactaaaatgtgacaggcaataccaagtgccgacaagattgtagaaa 33
Query: 605 aaaccaggtagaagtatttcaggaacttctgg 636
||| ||||||||||||||||||||||||||||
Sbjct: 32 aaaacaggtagaagtatttcaggaacttctgg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1106
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1096
Effective search space: 763912
Effective search space used: 763912
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no306_l16.g1 MSMg01no306_l16.g1 CHROMAT_FILE:
MSMg01no306_l16.g1 PHD_FILE: MSMg01no306_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:36 2005
(630 letters)
>mm_chr3_137505439_137506468
Length = 1030
Score = 1168 bits (604), Expect = 0.0
Identities = 624/632 (98%), Gaps = 4/632 (0%)
Strand = Plus / Plus
Query: 1 agtttaaaaagactctagctctgcatttgtcaccggatgtcataattttactgatgaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttaaaaagactctagctctgcatttgtcaccggatgtcataattttactgatgaaga 260
Query: 61 tttgctagcagcataacttgattattgctcactagttagagagaaagttttagtttatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tttgctagcagcataacttgattattgctcactagttagagagaaagttttagtttacct 320
Query: 121 tccagataatgtagtttttaagtcatcagttaagtaaatgaacatctttcctttctttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagataatgtagtttttaagtcatcagttaagtaaatgaacatctttcctttctttct 380
Query: 181 ctttctttcattctttcttttttttacatt--aaaaatttttttttaaataaaagatttt 238
|||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct: 381 ctttctttcattctttctttttttaacatttaaaaaattttttt--aaataaaagatttt 438
Query: 239 ttaaaaaaatttaacctatgtatgtacacctgtctgagttcatgtgtatcatgtgtggat 298
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tttaaaaaatttaacctatgtatgtacacctgtctgagttcatgtgtatcatgtgtggat 498
Query: 299 ctggtatccaaggaggctagaagagggggtcagatcattttagagctggagttacaagga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctggtatccaaggaggctagaagagggggtcagatcattttagagctggagttacaagga 558
Query: 359 gttgtgagttgctccatgtgggtgccgtgaagtgagctctggttctctgaaagagtgctg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gttgtgagttgctccatgtgggtgccgtgaagtgagctctggttctctgaaagagtgctg 618
Query: 419 tggtggtttgagtaggtatggtccccattaggaggtgtgtccttgttggagtgggtgtgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tggtggtttgagtaggtatggtccccattaggaggtgtgtccttgttggagtgggtgtgg 678
Query: 479 ccttgttttaggaagtatgtcactgtgggggtggctttgaggtctcctgtgctcaagctc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ccttgttttaggaagtatgtcactgtgggggtggctttgaggtctcctgtgctcaagctc 738
Query: 539 tgcccagtgtggaattcagtctcctcctggctgcctttagatcaagatgtagaactctta 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 739 tgcccagtgtggaattcagtctcctcctggctgcctttagatcaagatgtagaactctca 798
Query: 599 gctcttccagcaccatatctgcctgcatgctg 630
||||||||||||||||||||||||||||||||
Sbjct: 799 gctcttccagcaccatatctgcctgcatgctg 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
