BAC Information

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BAC

Clone NameMSMg01-306M16
Chromosome3 (Build37)
Map Location 69,009,176 - 69,009,659
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4
Downstream geneArl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-306M16.T7 (MSMg01no306_m16.b1)MSMg01-306M16.TJ (MSMg01no306_m16.g1)
ACCAG431351AG431352
length768769
length of high quality
(start - end)
485 (130 - 614)289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no306_m16.b1 PHD_FILE: MSMg01no306_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:40 2005CHROMAT_FILE: MSMg01no306_m16.g1 PHD_FILE: MSMg01no306_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:47:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATGCGCGG
AATTCTGGGGATTTGCGACAGAGGTTTTTAAAAAGGTCAGGAGTTGTACA
GAAATTGTAGGTCACAGGTTATGCCCTTGGAGTTTATTCTAGATTCTTCT
TGGAAGGCACTGGACAGTGGTGAGCAGGGAAACCCCTTGTGAGGACTATC
CTGGCTGCTGTGTAGCAAGCCAGCAGTGGGGCTAGGCAATGTGGAGGCAG
GGGTCTGGGCTGATGACTCTCAAAGCTGTCTTCCTTGGAGATGATGCCAT
ACCAGACTAGAGGAGCAGGGACAGGATGTGGAATCTGATCAGACTCAAGG
CTCAAGGTGTAAATTGGGAGGACTCCAGAGGGGGAGGGGGACTTGCTGGA
TAGGGGTGAAAGATGGAGGCTTCAGATAGCCCTTGAGTTTCGATTTTTAT
CTAAACAACAGGGAAACGATGTCGTCATTTACTGAGAGAATGGGGGAGGA
GGTTTTAAGAAGAATAACCAGGGCTAAAACGCTAGGTCTGTATAAAACCT
GCACAAGCAGACAGAAGAGACAGTAAACAGAGAGAAACAAATGCAACCAT
GGAAAATATGCAGTGTGTTTTTTTTACATCAAGCCAAATAGGAAGTATAC
CTGCCTTTTATTAAATATTTGGCAAGTAAAACACATGCAACACAGACACT
ACTTTTCATGAATATATTTTCAGATAGGTCATAGTAACAATTATTTAGAC
ATAGATTCGGACCCTACG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACTCCAAATATATACTGAATACA
TCATCTTAAGTTTATTACTAGGCCGGCTGTGGTGGCACACGCCTATAATC
CCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAACC
TGGTCTACAGAGTGAGTTCTAAGACAGCCAGGGCTACTCAGAGAAACCCT
ATCTCCAAAAGAAAAAAAAAATTATTACTTTCCGACAAAATCCCTAATTT
GTAATGCTCCAAATTAGTCAAACTGGTTTCTATGTAGTAGAGACTAAATA
AAATTCAGTTGAAATCTTCTTATTTACCACCCCACCCCGCAAGTCTTTAC
ATTCTTAAGATACCAAAGTAAAACTGCACATATAATGAATAGGCAAGGGC
GGGACTAAACATTTGCATAACATTATGCTTAGCAAAATTATTTAACGTAA
AGGGAGAATCTGTGACTTTTCTCAAATACTAGGGTTGTAGGTATGAGGAA
TCACAACTGTCAATCATAGCTTCTTACAAGTTATATTGGCTTCTCTAGAA
ATTGTTACTATTAACATCAGCACATAGCAATTCCTATTTCTTTTTTTTTC
TATTTTTTTTCTTTTTTTTTTTTCTTTTTTTTTGGTGGTGCTAATAAACT
CAAAGCCTTGTACATGCTTAACAAACAACACTTGAGTTATACAGCCCTCT
AAAGGGGTATTTTAACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no306_m16.b1 MSMg01no306_m16.b1 CHROMAT_FILE:
MSMg01no306_m16.b1 PHD_FILE: MSMg01no306_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:47:40 2005
         (485 letters)



>mm_chr3_69008976_69009859
          Length = 884

 Score =  891 bits (461), Expect = 0.0
 Identities = 479/485 (98%), Gaps = 1/485 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtttattctagattcttcttggaaggcactggacagtggtgagcagggaaaccccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gagtttattctagattcttcttggaaggcactggacagtggtgagcagggaaaccccttg 625

                                                                       
Query: 61  tgaggactatcctggctgctgtgtagcaagccagcagtggggctaggcaatgtggaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgaggactatcctggctgctgtgtagcaagccagcagtggggctaggcaatgtggaggca 565

                                                                       
Query: 121 ggggtctgggctgatgactctcaaagctgtcttccttggagatgatgccataccagacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggggtctgggctgatgactctcaaagctgtcttccttggagatgatgccataccagacta 505

                                                                       
Query: 181 gaggagcagggacaggatgtggaatctgatcagactcaaggctcaaggtgtaaattggga 240
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 gaggagcagggacaggaagtggaatctgatcagactcaaggctcaaggtgtaaattagga 445

                                                                       
Query: 241 ggactccagagggggagggggacttgctggataggggtgaaagatggaggcttcagatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggactccagagggggagggggacttgctggataggggtgaaagatggaggcttcagatag 385

                                                                       
Query: 301 cccttgagtttcgatttttatctaaacaacagggaaacgatgtcgtcatttactgagaga 360
           |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 cccttgagtttcga-ttttatctaaacaacagggaaatgatgtcgtcatttactgagaga 326

                                                                       
Query: 361 atgggggaggaggttttaagaagaataaccagggctaaaacgctaggtctgtataaaacc 420
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 atgggggaggaggctttaagaagagtaaccagggctaaaacgctaggtctgtataaaacc 266

                                                                       
Query: 421 tgcacaagcagacagaagagacagtaaacagagagaaacaaatgcaaccatggaaaatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcacaagcagacagaagagacagtaaacagagagaaacaaatgcaaccatggaaaatat 206

                
Query: 481 gcagt 485
           |||||
Sbjct: 205 gcagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space:   415150
Effective search space used:   415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)