BAC Information

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BAC

Clone NameMSMg01-307E19
Chromosome3 (Build37)
Map Location 147,348,598 - 147,348,883
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream geneLOC100040354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307E19.T7 (MSMg01no307_e19.b1)MSMg01-307E19.TJ (MSMg01no307_e19.g1)
ACCAG431707AG431708
length725740
length of high quality
(start - end)
683 (43 - 725)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no307_e19.b1 PHD_FILE: MSMg01no307_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:18 2005CHROMAT_FILE: MSMg01no307_e19.g1 PHD_FILE: MSMg01no307_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTAAGAACGCTGTCTATTCAGTAACATTCAGAATTGCCTCTAGTATT
GTAAAAGAGATAGTGAGAGAAATCAGGCATTACTATCTACTATATAGAGT
TAGAAATCTCGGGCAAGCTTAGCAAAGTAAGTTTAGAATTCTTGTTATAT
ATGGCAGACTACATAACGTATTAGTAGAAAGTCCCAACACACAATCACTC
ACATATACAGGAATTTGCAATGGTTTAGGAAGTAGATAAGGCTGTGATTT
GAGGAGGAACTAGAATATTGCATTATTCATGAGAAGGTTAGCTAGAGCGG
AACTCTCTAATTAGAACTATGGTTTGGGCGTGAAAGCCCTTGCCTCAGGA
GTGTAAAGACCTCCCACCCGGCTTCTAAGAATATGGCTGACCTTAGAGAG
AGCTGAGTTTGTCTCAGTTGTTTTATTGCCCAGTTCCTGCCGGTCTTTAT
GTTTGTATTCCTCTCTTTTGTGTAAGAGCCATTAAGTATCCAGTAACCTC
ATTGTACCTTGCTGATGTGTCACCTAACTTCCCTATTTTCTTTTGTATTA
AAAGTTTGATGCTCGATTTGACAAATTACATTCAGATACAGCACACTCCC
TTGTATCCATGTCTTTCTGTCACCCCTCCACACCAACTCCTTGCCCACCT
GTCCGGGACCCTGATTTCTTCCTCA
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTTATTACGTGAGGGAGATTTT
TTTTCCTAATAAGATTAATATGGCACCCTAATACAAATAAGAAAGAGATG
TGATTATCATTGTTTTTATAAGTTTTTCTCCTGAAATATATCATATAGAG
AAAATAGAGAATGATTTAAATGTCTTTATAATGAATATTTGCTGAGACCA
TATGGTAAAATTGTAGATCCCAAATGGCATTGATTTCCAGATAGTGCTCT
AATTTGAAATATTACAGATAACCTTTTTTTGGATCTGTTTCAAGTACATC
ATTGTCTTTATCTTTTTTTTTTCCCCCCCAACCCCTCCTGAAAATGGAAA
AAGAAAGGAAGAAAAAGTCTCCCCCCCCAAAAGATGATTGAATAAATTGA
GGGAGAAATAAACACATATTAAAAGTTACTATAAGGATACATAAGGAAGA
AATTTTTAACACACAAGACAATCTGTGGGTGAGATAAGATACCAAAACAC
ATGTTTAAAACCTTCTTCTGCGTTCTTAACATTGGTATTGCATCTTGGAA
AACTTTTCCATGATTTATACCCCTAGTTGGCCCTTTTCTCCACACTTTGT
CCCCCACATTTTTACTTGTATACCCTATCAGTCTTTTTTTTCCCCTTGCT
TGTCATAGTCTACCATGTTTTTTTTCACCCTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_e19.g1 MSMg01no307_e19.g1 CHROMAT_FILE:
MSMg01no307_e19.g1 PHD_FILE: MSMg01no307_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:18 2005
         (287 letters)



>mm_chr3_147348398_147349084
          Length = 687

 Score =  507 bits (262), Expect = e-148
 Identities = 280/286 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttattacgtgagggagattttttttcctaataagattaatatggcaccctaatacaaa 60
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 acttattatgtgagggagattttttttcctaataagattaatatggcagcctaatacaaa 260

                                                                       
Query: 61  taagaaagagatgtgattatcattgtttttataagtttttctcctgaaatatatcatata 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 taagaaagagatgtgattatcattgtttttataagtttttctcttgaaatatatcatata 320

                                                                       
Query: 121 gagaaaatagagaatgatttaaatgtctttataatgaatatttgctgagaccatatggta 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaaatagagaatgatgtaaatgtctttataatgaatatttgctgagaccatatggta 380

                                                                       
Query: 181 aaattgtagatcccaaatggcattgatttccagatagtgctctaatttgaaatattacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattgtagatcccaaatggcattgatttccagatagtgctctaatttgaaatattacag 440

                                                         
Query: 241 ataacctttttttggatctgtttcaagtacatcattgtctttatct 286
           |||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataacctaattttggatctgtttcaagtacatcattgtctttatct 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)