BAC Information

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BAC

Clone NameMSMg01-307M10
Chromosome3 (Build37)
Map Location 38,041,732 - 38,042,055
singlet/doubletsinglet
Overlap genenone
Upstream geneIl21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821
Downstream geneLOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307M10.T7 (MSMg01no307_m10.b1)MSMg01-307M10.TJ (MSMg01no307_m10.g1)
ACCAG432039AG432040
length733794
length of high quality
(start - end)
361 (47 - 407)324 (128 - 451)
definitionCHROMAT_FILE: MSMg01no307_m10.b1 PHD_FILE: MSMg01no307_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:55 2005CHROMAT_FILE: MSMg01no307_m10.g1 PHD_FILE: MSMg01no307_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGTCCTCTCTGGGTCCCTAAATCCCTCCCCTAGCTCTTACATG
CGAAGAGACTTCCAGAGCTCCATCTATGTTTGGCTGTGGGTCTCTGCATC
TCTTTTCATTGGCTGCTGGATGGAGCCTTTCAGAGGATAGTTATGGTAGG
CACCTGTTTGCAAGCATAACTGAGTATCATGAATAGTGTCAGGGATTCGT
TCTTGCCTATGTGATGGGTCTCAACTTAGGCTGACTATTGGTTGGCCACT
CCTTCACTCTGTTGAAGGTGCTCTCCCTTATCCATTGTATTGTTTTGGCT
TCTTTGTTAAAAAAAAAAAAAGTCAAGTATCCATAGATATGTGGGTTTAT
TTCTGAGTATTTGATTCCACACCATTGATCAACTTATTTGTTTCTCTACC
AATACCATGAAATTTTCTTACTATTGCTCTGTAGTACATCTTGAAGTCAG
GAATAATGATATTTCCAGAAGTTTTGTTTGCGTGTGTGTGTGTGTGGCTT
TTTGGTTTTTATTTTTTATTCCCGTTCTTCCTTACCCCTATCCTCTTCTT
CTTACCCCCCCTTTGTGCTATTCCCCTCTCGCCTTCTTTATTTCTTCTCC
CTTTTTCTTTCTTTTTTTTTTCCTTCCCCTCCCCTATTCCCTCTCTTTTT
CCTTCTTTCTTTTCCCCTCTTTCCTTTTCTCCC
TTTTTCCTTTTTTTTTTTGTCGTTCTCCTCCGCCTTCCCCCTCTCTCTTC
TNTCCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTTACTAGGATGTGTGGGTT
TTAATTTTGAGGCTTCGTTGCAGTTATGTGCTGTGTGACCTATTAGAATT
TCAACAGAGAATTCTAATTGGACTCCACACTAAGATGATTCCCTATCAGG
CTAATCCATACTTTCTTTCTTTCTTTCAACCCCTGGGGAATCACTAGGCT
GTTTTAGTCCATGAACCTCTGTGTCCAAATGAAAACAAACAAAGTAACCA
ACCAAGGAAGAAACACTGGGATTGTTTGTTCCCTCCGTTCTTTCTTCTTA
GTTTCTCTTGTTTTACTCATGTTCGATACACTGTATAGACTGATGTTCTA
GGAATAAAAATTATTCCCCCCGCCTTTTTCTTTTTAAGTCTTGGATAAGA
CACAGTCTGTATGATTCAGAAAGGGTGACCCTGGCATACACTCTGCAGTT
CCCCTTTGCAGATCAATGTAAACTCCAGACACTGTAATGTGGCTGGCATC
ACGTCATAGGAAATCTAGTCTGTATATGCTAAGCAGTCAACCGTTTTCCG
TTTCCATAGCGTTACTGGCAATGGATACTGGTTGCCTGGTGCTCCCACCC
CCCGCTTATAATAGGATGTAGTGCTTTACTTGCCCCCTCCTCTGTTTGCT
CCCGTGCCAATGATGGCAGGTTCAGCTTTTTGGACTCTTGCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_m10.g1 MSMg01no307_m10.g1 CHROMAT_FILE:
MSMg01no307_m10.g1 PHD_FILE: MSMg01no307_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:55 2005
         (324 letters)



>mm_chr3_38041532_38042255
          Length = 724

 Score =  627 bits (324), Expect = 0.0
 Identities = 324/324 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattttactaggatgtgtgggttttaattttgaggcttcgttgcagttatgtgctgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattttactaggatgtgtgggttttaattttgaggcttcgttgcagttatgtgctgtgtg 260

                                                                       
Query: 61  acctattagaatttcaacagagaattctaattggactccacactaagatgattccctatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acctattagaatttcaacagagaattctaattggactccacactaagatgattccctatc 320

                                                                       
Query: 121 aggctaatccatactttctttctttctttcaacccctggggaatcactaggctgttttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggctaatccatactttctttctttctttcaacccctggggaatcactaggctgttttag 380

                                                                       
Query: 181 tccatgaacctctgtgtccaaatgaaaacaaacaaagtaaccaaccaaggaagaaacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccatgaacctctgtgtccaaatgaaaacaaacaaagtaaccaaccaaggaagaaacact 440

                                                                       
Query: 241 gggattgtttgttccctccgttctttcttcttagtttctcttgttttactcatgttcgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggattgtttgttccctccgttctttcttcttagtttctcttgttttactcatgttcgat 500

                                   
Query: 301 acactgtatagactgatgttctag 324
           ||||||||||||||||||||||||
Sbjct: 501 acactgtatagactgatgttctag 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)