Query= MSMg01no307_p04.b1 MSMg01no307_p04.b1 CHROMAT_FILE:
MSMg01no307_p04.b1 PHD_FILE: MSMg01no307_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:08 2005
(207 letters)
>mm_chr3_62403205_62403811
Length = 607
Score = 329 bits (170), Expect = 8e-95
Identities = 182/186 (97%)
Strand = Plus / Minus
Query: 5 gaattcctgatgatacctgtgaaaattatttcttttataaagtaatgtaattatcataaa 64
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gaattcctggtgatacatgtgaaaattatttcttttataaagtaatgtaattatcataaa 290
Query: 65 atgattgttggcaagcgatgactgatatatgtttgatccatgggaacaaaagaggttagg 124
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 289 atgattgttggcaagcgatgactgatatatgtttgatccatgcgaacaaaagaggttagg 230
Query: 125 agacaagtttgttctctctgcctatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 184
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 229 agacaagtttgttctctctgcctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 170
Query: 185 tgtgtg 190
||||||
Sbjct: 169 tgtgtg 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space: 118404
Effective search space used: 118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no307_p04.g1 MSMg01no307_p04.g1 CHROMAT_FILE:
MSMg01no307_p04.g1 PHD_FILE: MSMg01no307_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:08 2005
(294 letters)
>mm_chr3_62230868_62231560
Length = 693
Score = 487 bits (252), Expect = e-142
Identities = 279/294 (94%), Gaps = 11/294 (3%)
Strand = Plus / Plus
Query: 1 attgggaggcgggaagggggagggtgagagggaaggagggaggagtccgttacatatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 211 attgggaggcgggaagggggagggtgagagggaaggagggaggagtctgttacatatgtt 270
Query: 61 agggagttggaagccatggtctcagatgatgataaaatgatggagatataaattcaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agggagttggaagccatggtctcagatgatgataaaatgatggagatataaattcaaata 330
Query: 121 agatgagaagaagctgtgtgtgcctgtgtgtgtgcatgtgtagataaatatgtatagtag 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 331 agatgagaagaagctgtgtgtg----------tgcatgtgtagataaatatgtatagtag 380
Query: 181 gtttggaaatggtgaagacaggagtcaaagaaatataatccctgatttgacaactgaatc 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gtttggaaatggtgaagacaggagtcaaagaaatataatccctgattggacaactgaatc 440
Query: 241 atttgtttttttattttcatactgtggaaagatgaattacatttggatatataa 294
||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgttttttaactt-catactgtggaaagatgaattacatttggatatataa 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 693
Length adjustment: 9
Effective length of query: 285
Effective length of database: 684
Effective search space: 194940
Effective search space used: 194940
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
