Query= MSMg01no308_a11.b1 MSMg01no308_a11.b1 CHROMAT_FILE:
MSMg01no308_a11.b1 PHD_FILE: MSMg01no308_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:14 2005
(619 letters)
>mm_chr3_62986516_62987534
Length = 1019
Score = 1102 bits (570), Expect = 0.0
Identities = 599/612 (97%), Gaps = 6/612 (0%)
Strand = Plus / Plus
Query: 8 gaattctccatctttctttgttacctgacttcaaggtataatgttctggaaaacctaaag 67
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctccatctttttttgttacctgacttcaaggtataatgttctggaaaacctaaag 267
Query: 68 ttttagcttattaaacaaatgttggcactttctgggaaactctggtctcatgaagttcct 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttttagcttattaaacaaatgttggcactttctgggaaactctggtctcatgaagttcct 327
Query: 128 gtgtagcttttaaccacagccttggcataattgctctgttttcattcagagtaatctaat 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtgtagcttttaaccacagccttggcataattgctctgttttcattcagagtaatctaat 387
Query: 188 cctgggagttgaattagacccttttagtagtctattaactttctctcaccccaaggggac 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cctgggagttgaattagacccttttagtagtctattaactttctctcaccccaaggggac 447
Query: 248 atgtgttcaattttcttaatgtgttccaagaattaaaatgtagaacaggccagcaacctt 307
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 448 atgtgttcaattttcttaatgtgttccaagaaagaaaatgtagaacaggccagcaacctt 507
Query: 308 ctgagaccctaatggtgaccagggaagagttttcaccagcttgtactgctgctttaattc 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ctgagaccctaatggtgaccagggaagagttttcaccagcttgtactgctgctttaattc 567
Query: 368 attccaaacgcccacttgatccatcagttagttctctctctgcaaatatagactggtgca 427
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 attccaaatgtagacttgatccatcagttagttctctctctgcaaatatagactggtgca 627
Query: 428 ctatctactctctctctctctctctctctctctctctctctctctctctctctctcccct 487
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 628 ctatctactctctctctctctctctctctctctctctctctctctctctc------ccct 681
Query: 488 ctttttggcttctatcatacaaacagaagcaaactctgtcctttactttccctcagtatg 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ctttttggcttctatcatacaaacagaagcaaactctgtcctttactttccctcagtatg 741
Query: 548 caaacaagtctgggtaatttctttctttttctcagctcttccttacttgcagaatctcaa 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 caaacaagtctgggtaatttctttctttttctcagctcttccttacttgcagaatctcaa 801
Query: 608 tcctatcactaa 619
||||||||||||
Sbjct: 802 tcctatcactaa 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_a11.g1 MSMg01no308_a11.g1 CHROMAT_FILE:
MSMg01no308_a11.g1 PHD_FILE: MSMg01no308_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:15 2005
(345 letters)
>mm_chr3_63162783_63163527
Length = 745
Score = 646 bits (334), Expect = 0.0
Identities = 340/342 (99%)
Strand = Plus / Minus
Query: 1 cttgggattccttggaataaagaagacatagaataggggagtctccactaaagccagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 cttgggattccttggaataaagaagacatagaataggggagtctccactaaagccagact 483
Query: 61 actgaattaccaaaagaattgggtttgcaaagagttggctctcagaccctccaatacctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 actgaattaccaaaagaattgggtttgcaaagagttggctctcagaccctccaatacctt 423
Query: 121 taaaggtctgttgcttattaagtctgaaagccagtatacttttttaaagggattttgata 180
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 422 taaaggtctgttgcttattaagtctgaaagccagtataattttttaaagggactttgata 363
Query: 181 aaacacacaggaataagataaccattatgttatagattgaatgttatggaagaaacaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaacacacaggaataagataaccattatgttatagattgaatgttatggaagaaacaatt 303
Query: 241 acctaatgtgatttggactactttaaatttcccattccagtgaaaagagatacatggatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acctaatgtgatttggactactttaaatttcccattccagtgaaaagagatacatggatc 243
Query: 301 tagggatacttcaagacatgagccaataactcaatatcagct 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tagggatacttcaagacatgagccaataactcaatatcagct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space: 247296
Effective search space used: 247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
