BAC Information

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BAC

Clone NameMSMg01-308A16
Chromosome3 (Build37)
Map Location 119,305,152 - 119,305,495
singlet/doubletsinglet
Overlap genenone
Upstream geneDpyd, LOC100043275
Downstream geneLOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308A16.T7 (MSMg01no308_a16.b1)MSMg01-308A16.TJ (MSMg01no308_a16.g1)
ACCAG432226AG432227
length739925
length of high quality
(start - end)
345 (73 - 417)---
definitionCHROMAT_FILE: MSMg01no308_a16.b1 PHD_FILE: MSMg01no308_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:15 2005CHROMAT_FILE: MSMg01no308_a16.g1 PHD_FILE: MSMg01no308_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCAGAACATCCGCGGA
ATTCTTTGGATTTTCATGAACAACCAGAGGTGACAGACTGATCCATTAGG
CAACATCGTGACCCAAACTGCTGAAGTGTGTTTCCATGATTCTTCTGCTT
GTACTTAAAGCTCATAGCAATAGTTGTCTCCTGAATCTCCTCTTTGTGTT
TTATTGGTACCCTTCACCTGCTTCATTGTGTGGGGCCTGGGGTATCAGTG
AGGAGGAATGAGTAAGTGTTGGAACTGCCAAGGTACGACGTTTTATCTTA
AAACACCAGCTATAGAATCTTATTTTGTTAGATAAGGGCCAGATAAGAGC
CTCCTGTAGATTAAGTCAAGATAGGTATTTTGCGTTTACCATGTTATTAT
GAATTTAAATAAGCCTGCCCCAACAGCCTATGTCTAGCCAGCAACTATGC
CATTAGGAAGCAAACAGAAGTAATGAATCTTTTTTGTTATGCAGGTGGTT
GTTGGATCTCTGATCCCAAATTCTTCTGGTGCAGGTAGCCAGCTTCTATC
AAAACTGAACATAGTTTTTATTATAAGACATCCATCGTCTAGCATCCCAT
ACAACCTTCTTCTTTACAGTTTTTCTATTAAGTATCAAGTCTCAGATTCT
AAAAGATATCACTCAGAATAATTTAACTTTCCTTTTCTTGACTATGTGTG
GAACATCTATTGTAGGAGCCCTCTGGGTCTTCCTGTTCC
TGGTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXNNGGAATTCTCACTCTGAGAGAATACATGAATGGGCACGAGAAA
CACCGTGAAAAAATGTCTCACCCTCCCTATAAACAGTGCAGGAAAATGCA
AANTTAAAACATACCCTGGAGATTTCCACCTTCACTCCCAGATCAGAATG
CGCTAATGATCAATAAACTCACGCCGACAGCCAAATAGATGGCGGAGGAT
GTACCACGAAAGGGGCAACACTCCCTTCTATTGTTTGGTAGCCATTCGCA
ACGCTTGATACAGCATCCGCTTTCTTACATGAACCCACTAACCCACCACG
TTTATTTTTTTTTTACCCCTCCTGTAAAGGCCGCCCTCCGAGAAAAAGAT
TTGGGGGTGGGATTTCCNANGACANAAGACCCCATTTATTTTTTTTTTTT
TTNNTGTNGNNGGGNGGGGGTGCCCCCCCCCCAAANNNTTNTATNNNNTA
AAAGTGGTTTCTCCCGCCCCCCCTGGCCTCTCCTTTTTTTTCCTTCCCTC
TCCCCCCTTCCCCGCTTAGCTCTTTCCCTTCCTTATCCCCCCTCCCGTTT
TCTTTTGTTCTCCCTCTATCTTTCCCCCCCGCGCCCCCGTCTCTCTCATT
GATACAGCCCGCGTATTATCCTATCCCCATACGCCCCCCCGCTTTTTTTA
ATCCCCGCCCCCATATTTATATCCCTCTACCCCCCTTTTATCGCCTATCG
CCCCCCTCATATCTATTACCCCCCATTTTAATCCATACCACACATTTTCT
TCGCCCCACCTCCCACTATTTATTATATATAATCAATGCCCCCCTTCACA
TACCCCACCCCCTCATTCTTCTACACACACCCCATATTACCCACTATTTA
TTTTTTACGCGTCCCAAATACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_a16.b1 MSMg01no308_a16.b1 CHROMAT_FILE:
MSMg01no308_a16.b1 PHD_FILE: MSMg01no308_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:15 2005
         (345 letters)



>mm_chr3_119304952_119305695
          Length = 744

 Score =  543 bits (281), Expect = e-159
 Identities = 329/345 (95%), Gaps = 1/345 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accagaggtgacagactgatccattaggcaacatcgtgacccaaactgctgaagtgtgtt 60
           ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||
Sbjct: 544 accagaggtgacagactgatccattagacaacatcgtgccccaaactgctgaagtatgtt 485

                                                                       
Query: 61  tccatgattcttctgcttgtacttaaagctcatagcaatagttgtctcctgaatctcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tccatgattcttctgcttgtacttaaagctcatagcaatagttgtctcctgaatctcctc 425

                                                                       
Query: 121 tttgtgttttattggtacccttcacctgcttcattgtgtggggcctggggtatcagtgag 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 424 tttgtgttttattggtacccttcatctgcttcattgtgtggggcctggggtatcagtgag 365

                                                                       
Query: 181 gaggaatgagtaagtgttggaactgccaaggtacgacgttttatcttaaaacaccagcta 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 364 gaggaatgagtaagtgttggaactgccaaggtacgacgttttatcttaaaacaccatcga 305

                                                                       
Query: 241 tagaatcttattttgttagataagggccagataagagcctcctgtagattaagtcaagat 300
           ||||||| ||   ||  ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 304 tagaatcctacagtgg-agataagggccagataagagcctcctgtagattaagtaaagat 246

                                                        
Query: 301 aggtattttgcgtttaccatgttattatgaatttaaataagcctg 345
           || ||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 245 agatattttgtgtttaccatgttattatgaatttaaagaagcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 744
Length adjustment: 9
Effective length of query: 336
Effective length of database: 735
Effective search space:   246960
Effective search space used:   246960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)