Query= MSMg01no308_k07.b1 MSMg01no308_k07.b1 CHROMAT_FILE:
MSMg01no308_k07.b1 PHD_FILE: MSMg01no308_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:01 2005
(371 letters)
>mm_chr3_119857870_119858640
Length = 771
Score = 667 bits (345), Expect = 0.0
Identities = 360/365 (98%)
Strand = Plus / Minus
Query: 7 gaattcagtggtgtaccgcatgaagagcatgcacaaagacctggtttgatgcttatcact 66
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 640 gaattcagtggtgtaatgcatgaaaagcatgcacaaagacctggtttgatgcttatcact 581
Query: 67 gcaaaaagagaaaactggtttagaaagattatatgattatactataaagtcattggttgt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gcaaaaagagaaaactggtttagaaagattatatgattatactataaagtcattggttgt 521
Query: 127 ctgagaacattctccaataaaataaatttaaacaaggtggtaagtctctacattttcaca 186
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 520 ctgagaacattctccaataaaagaaatttaaacaaggtggtaagtctctacattttcaca 461
Query: 187 tccatactgatagagtttgtatgtactttcactgtaagtccttaatctaatcaaggcaaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tccatactgatagagtttgtatgtactttcactgtaagtccttaatctaatcaaggcaaa 401
Query: 247 ggtttcacaaaactgctaaacaaatgaaatatgtgatttgaaaatttctcagctcaaaaa 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgtttcacaaaactgctaaacaaatgaaatatgtgatttgaaaatttctcagctcaaaaa 341
Query: 307 tttatgagagtgatctcatgcaacttttgaagttttcatcatgtaaatattttcagttat 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tttatgagagtgatctcatgcaacttttgaagttttcatcatgtaaatattttcagttat 281
Query: 367 gatac 371
|||||
Sbjct: 280 gatac 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no308_k07.g1 MSMg01no308_k07.g1 CHROMAT_FILE:
MSMg01no308_k07.g1 PHD_FILE: MSMg01no308_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:01 2005
(550 letters)
>mm_chr3_119753292_119754241
Length = 950
Score = 944 bits (488), Expect = 0.0
Identities = 534/556 (96%), Gaps = 12/556 (2%)
Strand = Plus / Plus
Query: 1 ttggtatcttaagcacagagaagggcttgtataccaaagaagggcaagccccaaaggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggtatcttaagcacagagaagggcttgtataccaaagaagggcaagccccaaaggagc 260
Query: 61 taactgactgtggtttgttgcagtgttgtgatgtgtggtgacacagatgcatcatgccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taactgactgtggtttgttgcagtgttgtgatgtgtggtgacacagatgcatcatgccag 320
Query: 121 caccaggcctgttgactttgcatctcttgtcattttccctacacggcgctgcttgaatct 180
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccagggctgttggctttgcatctcttgtcattttccctacacggcgctgcttgaatct 380
Query: 181 acacaagctcacagtcagatttcagcttgaattgtaggaagcaaatagaagtttgtagca 240
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 acacaagcttacagtcagatttcaacttgaattgtaggaagcaaatagaagtttgtagca 440
Query: 241 ggaaacaaggaaaagactggagctatgaagtcaccgcccatccgccacccccaactaaaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ggaaacaaggaaaagactggagctatgaagtcaccgcccatccgccacccccaaataaaa 500
Query: 301 tctctaccttgactaagagtctgctgtttgatgctcctctgct------cccccccccca 354
||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct: 501 tctctaccttgactaagagtctgctgtttgatgctcctctgcttagtttctcc------a 554
Query: 355 cagattcgaacccccggctttcctctctgggtaggttagagagaaggattacgggatctc 414
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 555 cagattcgaacccccggctttcctctccgggtaggttagagagaaggattacgggatctc 614
Query: 415 tgaatttttctgcaagctcccccgtgcagctgaccagatgctgcattgccttcccgcctc 474
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgaattcttctgcaagctcctccgtgcagctgaccagatgctgcattgccttcccgcctc 674
Query: 475 gctgactacgtagcttctgaagcccatgacccttgtccagtctcctgactcccttgtttt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gctgactacgtagcttctgaagcccatgacccttgtccagtctcctgactcccttgtttt 734
Query: 535 atctgttctctagatt 550
||||||| ||||||||
Sbjct: 735 atctgttttctagatt 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
