BAC Information

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BAC

Clone NameMSMg01-308P02
Chromosome3 (Build37)
Map Location 5,340,536 - 5,340,781
singlet/doubletsinglet
Overlap geneZfhx4
Upstream geneLOC620283
Downstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308P02.T7 (MSMg01no308_p02.b1)MSMg01-308P02.TJ (MSMg01no308_p02.g1)
ACCAG432877AG432878
length737731
length of high quality
(start - end)
374 (46 - 419)249 (130 - 378)
definitionCHROMAT_FILE: MSMg01no308_p02.b1 PHD_FILE: MSMg01no308_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:24 2005CHROMAT_FILE: MSMg01no308_p02.g1 PHD_FILE: MSMg01no308_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCTTTCCCTAAACATAATAAAAGCAATCTACAGCAAACCAG
TAGCCAACATCAAAGTAATATGGACAGAAGCTGGAAGCAATCCCACTAAA
ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAG
TACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGC
ATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATAT
GATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACC
TGATAAACAGCTTTGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAC
TCAATGGCCTTTCTCTACACCCACCAATAAACAGGCTGAGAAAGAAATTA
GGGAAACAACACCGTTCTCAATAGTCACAAATAATATAAAATATCTCGGC
GTGACTCTAACTAAGGAAGTAAAAGATCTGTATGATAGAACCTTCAAGTC
TCTGAAGAAAGAAATTACAGAAGATCTCAGAAGATGGAAAGATCTCCCAT
GCTCATGGATTGGCCGGATCAACATTGTAAAAATGCCTATCTTGCCCCAA
GCAATCTATAGATTCTACGCAATCCCCATCAAAATTCCAACCGAATTCTT
CCCCGAACTCACAACGAGCAATTTCGCAAATCCATCN
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAGGTTGTTTTTCTGA
GTATTACAGAAGCTGTGTCTTATCACCCACCCTCCCCAACACACAGCCAA
CAAAACAGAGATAACTGCTGCCACTGGACTGACAAGCCTAGAGCTATATA
GCATATGTTTCTTTGATAGCAATTACTTGTTGATTCTTTAGTAGAGAATC
AAACACGGTTTTATTAAATTAATAGTTTTAAACCTTGTTATCGATTTTAC
TTTATATTAATATAATCTTAATACAAATAGATGACACATTTAAATGAGAA
CTTCTTTTTTTCTTTACTTTTTAAACTCACCGCGAAATGTGGTCGGTTAA
CTTTTCAATAATAGTCTTTTAACAACACCTTATTGTCATTCTTGGTAACA
AGTATGTCAGGTTGGTGTTAGATCAGAACACTTAGCTCGTTGTTTTTCAA
ATGTGTTATTTTGTTAAGCTACTTAGGGTACATGTCTAGGATAAAAACAG
ATATAATGATAGCCAATGAAATACAGATGTGAGAAGGGTCAAGTTAATAG
AATTTAGCGCAATCATCACAAGGTAAGACATAAACAAGTGAGCCTGGCAG
TGGTGGCAGACACCTTTAATCCCAGAATTTCGAAGGCAGAGGCAGGTGGA
TATCTGAGTTCGAGGCCAGCCTGGTCTACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_p02.g1 MSMg01no308_p02.g1 CHROMAT_FILE:
MSMg01no308_p02.g1 PHD_FILE: MSMg01no308_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:24 2005
         (249 letters)



>mm_chr3_5340335_5340982
          Length = 648

 Score =  431 bits (223), Expect = e-125
 Identities = 241/247 (97%), Gaps = 1/247 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   cctccccaacacacagccaacaaaacagagataactgctgccactggactgacaagccta 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 447 cctccccaacacacagccaacaaaacagagataactgctgccactggactggcaagccta 388

                                                                       
Query: 62  gagctatatagcatatgtttctttgatagcaattacttgttgattctttagtagagaatc 121
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cagctatagagcatatgtttctttgatagcaattacttgttgattctttagtagagaatc 328

                                                                       
Query: 122 aaacacggttttattaaattaatagttttaaaccttgttatcgattttactttatattaa 181
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 327 aaacacggttttattaaattaatagttttgaaccttgttatcgattttactttatattaa 268

                                                                       
Query: 182 tataatcttaatacaaatagatgacacatttaaatgagaacttctttttttctttacttt 241
           |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 267 tataatcttaatacaaatagatgacacatttaaatgaggactt-tttttttctttacttt 209

                  
Query: 242 ttaaact 248
           |||||||
Sbjct: 208 ttaaact 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space:   153360
Effective search space used:   153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)