Query= MSMg01no309_b12.b1 MSMg01no309_b12.b1 CHROMAT_FILE:
MSMg01no309_b12.b1 PHD_FILE: MSMg01no309_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:35 2005
(319 letters)
>mm_chr3_62665440_62666159
Length = 720
Score = 578 bits (299), Expect = e-169
Identities = 308/311 (99%), Gaps = 1/311 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaaagagccactatttttaattggctagtgtgatattactgtatggagcatttg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaagagccactatttttaattggctagtgtgatattactgtatggagcatttg 264
Query: 65 ttgctcttataactcatgttctacttaggcaataacactaaatttttaccaagtacaata 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgctcttataactaatgttctacttaggcaataacactaaatttttaccaagtacaata 324
Query: 125 tctaggaactgttttatgaactacacatttaatactccacatcaaagtcccatttggata 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 tctaggaactgttttatgaactacacatttaatactccacttcaaagtcccatttggata 384
Query: 185 gtgcaagtagttcaattgaaaaatatacaaaatgatatgagatgtataaatcctaattca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtgcaagtagttcaattgaaaaatatacaaaatgatatgagatgtataaatcctaattca 444
Query: 245 gtaagacaaaaaaaa-tggaaaatcaagacaatgttaattctctggaaataattttaacc 303
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtaagacaaaaaaaaatggaaaatcaagacaatgttaattctctggaaataattttaacc 504
Query: 304 ctatagaaatg 314
|||||||||||
Sbjct: 505 ctatagaaatg 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space: 220410
Effective search space used: 220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no309_b12.g1 MSMg01no309_b12.g1 CHROMAT_FILE:
MSMg01no309_b12.g1 PHD_FILE: MSMg01no309_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:35 2005
(584 letters)
>mm_chr3_62825415_62826397
Length = 983
Score = 1083 bits (560), Expect = 0.0
Identities = 578/584 (98%), Gaps = 1/584 (0%)
Strand = Plus / Minus
Query: 1 aatttctcttcatataagcaaaggggttaaaaatgaaatacaatgggcaaggaaagctca 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 968 aatttctcttcatataagcaaaggggttaaaaatgaaatacagtgggcaaggaaagctca 909
Query: 61 ctgggtaaaagcatatactgccaagcatcacaacttggactctgtctttgtgatccacat 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 ctgggtaaaagcatatgctgccaagcatcacaacttggactctgtctttgtgatccacat 849
Query: 121 aatggaaggagagagccagctcccacaaattgtcatctggtctccacatatgtgttatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 848 aatggaaggagagagccagctcccacaaattgtcatctggtctccacatatgtgtcatgg 789
Query: 181 cacacatttcccccaggatgagataaataaatgtaattaaagcactaaagttgagtataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cacacatttcccccaggatgagataaataaatgtaattaaagcactaaagttgagtataa 729
Query: 241 gacagaaaaggtaagttaaaaataatttacagagatgatactctttggaagaaaagaaaa 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gacagaaaagttaagttaaaaataatttacagagatgatactctttggaagaaaagaaaa 669
Query: 301 aggtagaatagaaggaatgtagttacttatttgaagaagtttaattcctgctgcaaaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aggtagaatagaaggaatgtagttacttatttgaagaagtttaattcctgctgcaaaact 609
Query: 361 acaactttttataatatatgctagtactttgataggaatttgaattatgctatcttattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 acaactttttataatatatgctagtactttgataggaatttgaattatgctatcttattc 549
Query: 421 ttaaggacaaacttgaaagactgttattacttattttcactttgtccacacaaaactttt 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 548 ttaaggacaaacttgaaagactgttattacttattttcactttgtctacacaaaactttt 489
Query: 481 tcacaaaagtaggtggatttctcacttctttggtgagaaagaagagattacaaaattgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tcacaaaagtaggtggatttctcacttctttggtgagaaagaagagattacaaaattgca 429
Query: 541 gtgtagtttatccttctcttatgctacctacatttttttctaca 584
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 428 gtgtagtttatccttctcttatgctacctaca-ttttttctaca 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 983
Length adjustment: 10
Effective length of query: 574
Effective length of database: 973
Effective search space: 558502
Effective search space used: 558502
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
