BAC Information

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BAC

Clone NameMSMg01-312E02
Chromosome3 (Build37)
Map Location 6,958,285 - 6,958,981
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
Downstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7, LOC620822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312E02.T7 (MSMg01no312_e02.b1)MSMg01-312E02.TJ (MSMg01no312_e02.g1)
ACCAG434525AG434526
length744743
length of high quality
(start - end)
701 (44 - 744)669 (75 - 743)
definitionCHROMAT_FILE: MSMg01no312_e02.b1 PHD_FILE: MSMg01no312_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:17 2005CHROMAT_FILE: MSMg01no312_e02.g1 PHD_FILE: MSMg01no312_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGTTGTATATCTTCTTAAAATTCCCTCAGAAACAGATAAATGAAGA
CTTTTTTTCTTCATGGAATGGTAAACAGGAGTCATCACATATAACTCTCA
GTGGGAGAAGAACCACTGTACCATGGCTTCAGCCACTTAAGCAATCTAAG
AAACATTAAAAGTGTTTGATACATGAAACAATGATATACATTTTCTTACA
TGCAGTTTATCCAGGATTTGGTCTATTATACAATGTTCAAAAGAAAGACA
ACAAGCATAAAACAACCTATACTAGACCAGTCATCAATCAGTAAATTGCC
AACTTGGGATAGCATTCAATATCCAAATAGTAGAAAACAGTACTACTTAA
TAAGGAGTAGGTAAGAACAGGTAGAATCAAAACAGTAGGGAAGCACAAAG
TTCAAATTTCATGTGCTTCCTGGAGCCAATGAAGGAAATGAAGGAATGAT
TTAAAACAAATCATAAAACAAATAATAGATAGAAGTTAAGTTCTTACTCT
TATGCTCAGAAAACCAAAGTGTGGTGAAATAAACCAAATGGTTTAAGCAT
ACGAAGGAAGTAATTCAGCAGATGTCAATAAGCAGTGCATTTATTAGATT
GGTTTTTCTTAATATGTTTTCCAGATGTTTTGTGGAATAATTGTTGACAC
AATAATCTGCACGGGCATGTTAACACTAAAGTCAACCGAAGGTT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCACATTTTT
TAATATGGTTATTTGATTTTCTGGAGTCCAGCTTGTTGAGTTCTTTGTAT
ATGTTGGATATTAGCCCCTATTAGATTTAGGATTGGTAAAGATCTTTTCC
TAATCTGTTGGTTGCTGTTTTGTCCTATTGACAAAGTCCTTTGCCTCACA
GAAACTTTGAAAGTCTATGAGGTCTTATTTGTTAACTCTTGATCTTACAG
CACAAGCCATCGGTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATGT
TCAAGGATCTTCCTCACTTTCTTTTCCATTAGTTTCAGTGTATCTGGTTT
TATGTGGAGTTCCTTGATCAACTTAGACTTGATTTATGTATAGGGAAATA
ATGAATCAATTCACATTCTTCTACATGCTAGCTGCCAGTTGAACCAGGAC
CATATGTTAAAAAGGCTGTCTATTTTCCACTTGGTGGTTTTAGCTGCTTT
GTCAAAGATCAAGAGACCATAGATGTGTGGGTTCATTTCTGGGTCTTCAA
TTCTGTCTGTTGCTGTACCAGTACCATGTAGTTTTTGTTTTTATCACAAT
TGTTCTGTAGTACAGCTGGAGGTCAGGGATGGTGATTCCCCAGAAGATGC
TCCAACATGTAATAAGTACATATGCTTCCCTATGTTCATAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_e02.b1 MSMg01no312_e02.b1 CHROMAT_FILE:
MSMg01no312_e02.b1 PHD_FILE: MSMg01no312_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:17 2005
         (701 letters)



>mm_chr3_6958081_6959181
          Length = 1101

 Score = 1332 bits (689), Expect = 0.0
 Identities = 695/697 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagttgtatatcttcttaaaattccctcagaaacagataaatgaagactttttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gaattccagttgtatatcttcttaaaattccctcagaaacagataaatgaagactttttt 842

                                                                       
Query: 65  tcttcatggaatggtaaacaggagtcatcacatataactctcagtgggagaagaaccact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tcttcatggaatggtaaacaggagtcatcacatataactctcagtgggagaagaaccact 782

                                                                       
Query: 125 gtaccatggcttcagccacttaagcaatctaagaaacattaaaagtgtttgatacatgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gtaccatggcttcagccacttaagcaatctaagaaacattaaaagtgtttgatacatgaa 722

                                                                       
Query: 185 acaatgatatacattttcttacatgcagtttatccaggatttggtctattatacaatgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 acaatgatatacattttcttacatgcagtttatccaggatttggtctattatacaatgtt 662

                                                                       
Query: 245 caaaagaaagacaacaagcataaaacaacctatactagaccagtcatcaatcagtaaatt 304
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 661 caaaagaaagacaacaagcataaaacaacctatactagaccagtcaccaatcagtaaatt 602

                                                                       
Query: 305 gccaacttgggatagcattcaatatccaaatagtagaaaacagtactacttaataaggag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gccaacttgggatagcattcaatatccaaatagtagaaaacagtactacttaataaggag 542

                                                                       
Query: 365 taggtaagaacaggtagaatcaaaacagtagggaagcacaaagttcaaatttcatgtgct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 taggtaagaacaggtagaatcaaaacagtagggaagcacaaagttcaaatttcatgtgct 482

                                                                       
Query: 425 tcctggagccaatgaaggaaatgaaggaatgatttaaaacaaatcataaaacaaataata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcctggagccaatgaaggaaatgaaggaatgatttaaaacaaatcataaaacaaataata 422

                                                                       
Query: 485 gatagaagttaagttcttactcttatgctcagaaaaccaaagtgtggtgaaataaaccaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gatagaagttaagttcttactcttatgctcagaaaaccaaagtgtggtgaaataaaccaa 362

                                                                       
Query: 545 atggtttaagcatacgaaggaagtaattcagcagatgtcaataagcagtgcatttattag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atggtttaagcatacgaaggaagtaattcagcagatgtcaataagcagtgcatttattag 302

                                                                       
Query: 605 attggtttttcttaatatgttttccagatgttttgtggaataattgttgacacaataatc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 301 attggtttttcttaatatgttttccagatgttttgtggaataattgttgacacgataatc 242

                                                
Query: 665 tgcacgggcatgttaacactaaagtcaaccgaaggtt 701
           |||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgcacgggcatgttaacactaaagtcaaccgaaggtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)