XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAT
AAAAATGAGGGAACAACATGCTCAAACTTATAAGACAGTATGAAAGTAAA
GCTCATAGTTCTGCCACTCATAAAAAAAATTGAGAGTTCTCATACTAACA
AATTAAAAGTACATTTAAAGGCTCTAGGAGAAAAGAAGAAGGAGGAGGAG
GCAGCAATAGCAGCAAATACACACAGGAAGAGTAAATTATAGGAAATAAT
CAACTTGAGGGCAGAAATTAATCAATTAGAAATGAAGAAAACAATACAAA
GAATCACCTAAATCAAGAGCTGATTCCTTGAGAAAATCAACAAGATAGAC
AAATCCTTGGTCAAACTACACTACCAGGCAGAGAGATTCTCCAAATTAAC
AAAATCAGAAATGAAGACAGGGACATAACAATGGACACTGAGGACAATCA
AAGACTCAGCATAGCTTATTCAAAAGCCTGTTCTTCACAAAACTGGAAAA
TCCAAATGAAATGGATGATATTTTTAGATAGATACCAATTCCAAAATCTA
AATCAAGATCAGGTAAACTATCTGAAGAAATAGAAGTAGTCATTAAAAGT
CTCCCAATCAAAAAATGCCTTGAACCAGATGATTTTATTGAAGAATTCTA
CCAAACTTTCAAAGAGCTAATGCCAATACTCCTCAAAACTATTCCACAAT
ATATAAACAGAAGACACACTGTCAAACTCATTTTATGAGGCCAGTTACCC
TGATACATAAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTATTAAATACCAGAGCTCCAGTAATTTTTATA
ATTCTCTTTTTTGCTTTTAAAAAAAATCTCAATATTTTTCTTTTTACTTC
ATAGCACCAGCCAGAATCTTCCAGCTCACTTTTCTCAGGTTTTGTTTTTG
TTTTTATTGTTGTTTGCTTTTTTTTTTTTGTCTTTAGATATGGCTTTATT
GTGTTGCTTTGCAAGCCTTGGGCTCCTAAGCTCAAAGAATCTATCCTCCT
GCCTCACCATCAAAAGGGTTGAGAGTCCCCATGTGTATGAGTCTCTGTAG
AAAGCAGCTACTAGAGAAAACTAAACGCAAGCTGACTTTTCTCAGCTGAG
TGTTGATTTTCTTGTTGGTTCCTCTCAATGCCAGGCAATGCTTAAGATCC
ACTCAGTGCTGGGTTTAGAAAGAGCAGAGTTTGTCCCTAGCAACGTCATC
GCATATAGAAACAAAACAGTCAAAGCTTTAACAAACTGAAAAGCACAAAT
AGATTAAAACGTGATTGCACTCTAGAATAAAAGCTAACTGCCAATCAATA
ATCAATCCATGGACTGTAAAGTAAACTAAGCAAATAAGATTTTTTTTCTG
TTTGGCGAACAGTAAGTCTAGTATAAGGGTATGTATATTGATCAATTTCT
TTCAATATCTATCCCACATTATATTATTAGCAGCTACCCTTCACTGTGAG
TCAGGC

Query= MSMg01no312_k17.g1 MSMg01no312_k17.g1 CHROMAT_FILE:
MSMg01no312_k17.g1 PHD_FILE: MSMg01no312_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:48 2005
         (589 letters)



>mm_chr3_119591721_119592709
          Length = 989

 Score = 1031 bits (533), Expect = 0.0
 Identities = 543/549 (98%), Gaps = 5/549 (0%)
 Strand = Plus / Minus

                                                                       
Query: 46  tgcttttaaaaaaaatctcaatatttttctttttacttcatagcaccagccagaatcttc 105
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 tgcttttaaaaaaaatctcaatatttttctttttacttcatagcaccagccagaatcttc 930

                                                                       
Query: 106 cagctcacttttctcaggttttgtttttgtttttattgttgtttgc-----ttttttttt 160
           ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||
Sbjct: 929 cagctcacttttctcaggttttgtttttgtttttattgttgtttgctttttttttttttt 870

                                                                       
Query: 161 tttgtctttagatatggctttattgtgttgctttgcaagccttgggctcctaagctcaaa 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tttgtctttagatatggctttattgtgttgctttgcaagccttgggctcctaagctcaaa 810

                                                                       
Query: 221 gaatctatcctcctgcctcaccatcaaaagggttgagagtccccatgtgtatgagtctct 280
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 809 gaatctatcctcctgcctcaccatcaaaagggttgagagtccccatgtgtataagtctct 750

                                                                       
Query: 281 gtagaaagcagctactagagaaaactaaacgcaagctgacttttctcagctgagtgttga 340
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gtagaaagcagctactagagaaaactaaacgcaagctgacttttctcagctgagtgttga 690

                                                                       
Query: 341 ttttcttgttggttcctctcaatgccaggcaatgcttaagatccactcagtgctgggttt 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ttttcttgttggttcctctcaatgccaggcaatgcttaagatccactcagtgctgggttt 630

                                                                       
Query: 401 agaaagagcagagtttgtccctagcaacgtcatcgcatatagaaacaaaacagtcaaagc 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agaaagagcagagtttgtccctagcaacgtcatcgcatatagaaacaaaacagtcaaagc 570

                                                                       
Query: 461 tttaacaaactgaaaagcacaaatagattaaaacgtgattgcactctagaataaaagcta 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttaacaaactgaaaagcacaaatagattaaaacgtgattgcactctagaataaaagcta 510

                                                                       
Query: 521 actgccaatcaataatcaatccatggactgtaaagtaaactaagcaaataagattttttt 580
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 actgccaatcaataatcaatccatggactgtaaagtaaactaagcaaataagattttttt 450

                    
Query: 581 tctgtttgg 589
           |||||||||
Sbjct: 449 tctgtttgg 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)