XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
TTGTGGATGCCCAAAGAAAAATAGGAAAATTGGTTTTGTCAAAGGAGTTC
CCTGCCAGGTATTCTACTCTCTCTGAAGCCGTATCTTTCTAAAATTCTTA
TAGTGCATCTATTGTGGTAACTTTTGTATTTATCAGATAATCAGGGAAAA
AGTAAAACAAAGGATGATCCTTTTCATGTATCTACCAAGATCTAACACTC
TAATCATCACTAGGCTGAAAGTATCCTATTTTACTTAATGTAATATTTTA
ATAATATCCAAGCATCCATTTCAGTATTTATTTATATGTTCTTTTACCTT
TTATACTTCTTTTGATTCCTTCCCGCCCCCTCTTACTTACTTTATGCCTA
AGTGTTTCATTTCACACCCCAGATCATATAAATTGTATTGTTTGTACTTC
TAAATTCCAATTAACAGTTGTTGCCATGGTGAAAATGACTCAAAGTTCTA
TAATAAAATTGTATCCTGTAACTTTGACACATCCTGCAGTGTTTCATAAT
CTTTAATTGATTTACTAACATGATAAGAATCTTGTCCCCTTTGAATAATG
GATGAAGTGTCTGATTTGAGTGAGAATGCTCTAATAGGGTTCTAAATCTT
GAACTGTTTGTCTCGAACTCTGTCGTAATCTGTTTGATTTTTCCTATTTA
TTATCTGATAGTGTTACCATTACTTTAACCGACATTCCTATC

CAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGCATGTAGTCTTGTGATCTGCTCACTTTCC
CAGCTCATATTATCCACTATCCTGTCAAAGGAATGATGTTACCCATGGTG
GCAGTACATATGTCTTTCTACTAATAAAGATAATCTCTATAGACAAGCCC
TTATAGCTGACTAAACCTAGACTATCTCCCACTGAGACTACCTAGGTGAT
CGATGCACAATTATGCTAATCATTATAATTAAAAAGATACCCCTTTTGGT
TAATCATTAATTGCTCTTTCGATTTGCTTTTTTTATAAATACCTCCCTAT
ATTTGAGTTATTTCCCCCTCTCCCCCACCTTTTATATTGCTTATTTTCCT
TCTTCCTACCCCCCCGACAAAAAAAAAAAAAAACAGGGGGAGGGGAGGGT
TTATCATTTTAAAATAATAAATGCCTATTCACTTTTTACTAACTATCTAT
TCAAGGAAGCTAAACTGTCTCTTATTTTACTATATCATTTCTTCCTTCTA
AGCGATTTTACCTATTCATCTACATCCAAAATTCACCTTTTACATATCTT
TTACGCCTTGTCATATATACCTTATCTCAGGCATTTGACTATACAATTCT
TTTATCCTTTACTCCTTTTGTCTTTATATCTGGATAATTATCATTATTAT
ACCCTTGAATTTCATACCCATTTTTTCGAATATGCTATTTATTCGT

Query= MSMg01no312_l07.b1 MSMg01no312_l07.b1 CHROMAT_FILE:
MSMg01no312_l07.b1 PHD_FILE: MSMg01no312_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:50 2005
         (240 letters)



>mm_chr3_72665200_72665839
          Length = 640

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaagccgtatctttctaaaattcttatagtgcatctattgtggtaacttttgtattta 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 438 ctgaagccgtatctttctaaaactcttatagtgcatctattgtggtaacttttgtattta 379

                                                                       
Query: 61  tcagataatcagggaaaaagtaaaacaaaggatgatccttttcatgtatctaccaagatc 120
           ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 378 tcagataatcagggaaaaagtaaaacagaggatgatccttttcatgtatctaacaagatc 319

                                                                       
Query: 121 taacactctaatcatcactaggctgaaagtatcctattttacttaatgtaatattttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 taacactctaatcatcactaggctgaaagtatcctattttacttaatgtaatattttaat 259

                                                                     
Query: 181 aatatccaagcatccatttcagtatttatttatatgttcttttaccttttatacttct 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aatatccaagcatccatttcagtatttatttatatgttcttttaccttttatacttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no312_l07.g1 MSMg01no312_l07.g1 CHROMAT_FILE:
MSMg01no312_l07.g1 PHD_FILE: MSMg01no312_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:51 2005
         (245 letters)



>mm_chr3_72541047_72541691
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcatgtagtcttgtgatctgctcactttcccagctcatattatccactatcctgtcaa 60
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 201 atgcatgtagtcttgtgatctgctcactttcccagctcataaaatccactatcctgtcaa 260

                                                                       
Query: 61  aggaatgatgttacccatggtggcagtacatatgtctttctactaataaagataatctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaatgatgttacccatggtggcagtacatatgtctttctactaataaagataatctct 320

                                                                       
Query: 121 atagacaagcccttatagctgactaaacctagactatctcccactgagactacctaggtg 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagacaagcccttagagctgactaaacctagactatctcccactgagactacctaggtg 380

                                                                       
Query: 181 atcgatgcacaattatgctaatcattataattaaaaagataccccttttggttaatcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcgatgcacaattatgctaatcattataattaaaaagataccccttttggttaatcatt 440

                
Query: 241 aattg 245
           |||||
Sbjct: 441 aattg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)