Query= MSMg01no312_l11.b1 MSMg01no312_l11.b1 CHROMAT_FILE:
MSMg01no312_l11.b1 PHD_FILE: MSMg01no312_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:51 2005
(321 letters)
>mm_chr3_60397550_60398270
Length = 721
Score = 439 bits (227), Expect = e-127
Identities = 275/317 (86%), Gaps = 41/317 (12%)
Strand = Plus / Plus
Query: 4 ggaattctacttccctttgatatgcatttaagctgtgttccagggatgtgcttatagtgt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctacttccctttgatatgcatttaagctgtgttccagggatgtgcttatagtgt 263
Query: 64 tagtgtcttatgcagtttgtagggggagggtgtttataaccttcgtgtcttatgcagttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tagtgtcttatgcagtttgtagggggagggtgtttataaccttcgtgtcttatgcagttt 323
Query: 124 gcagagctgatggctctataaactgggtgatttaggcatcaggacatgaccactctgggg 183
||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 gcagagctgatggctctataaactgggggatttaggcatcaggac--------------- 368
Query: 184 taagcttttgtggtaatataagagagggtacagccagaggcatctggaagagtccagagc 243
||| |||||||||||||||||||||||||||||||
Sbjct: 369 --------tgt------------------acagccagaggcatctggaagagtccagagc 402
Query: 244 agggagagaaagtagtaggagggtgaacatggccagcagactagagttgtcagtgaggtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agggagagaaagtagtaggagggtgaacatggccagcagactagagttgtcagtgaggtg 462
Query: 304 agtcaggagccagagag 320
|||||||||||||||||
Sbjct: 463 agtcaggagccagagag 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no312_l11.g1 MSMg01no312_l11.g1 CHROMAT_FILE:
MSMg01no312_l11.g1 PHD_FILE: MSMg01no312_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:51 2005
(290 letters)
>mm_chr3_60429430_60430118
Length = 689
Score = 545 bits (282), Expect = e-160
Identities = 288/290 (99%), Gaps = 1/290 (0%)
Strand = Plus / Minus
Query: 1 actgaaatccactcatatttgcttccaacatgctgggattaaaggtacgtaccatcatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 actgaaatccactcatatttgcttccaacatgctgggattaaaggtacgtaccatcatat 495
Query: 61 ctggccagaactactctgagaaagttacaaatggacaaatctttttcttaaataactgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctggccagaactactctgagaaagttacaaatggacaaatctttttcttaaataactgtt 435
Query: 121 aactgcaacatatctttggcagggatcctcagtcgtacattttgtctttaaatgcctctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aactgcaacatatctttggcagggatcctcagtcgtacattttgtctttaaatgcctctc 375
Query: 181 cctctgacctcctttctctctcttctggaacctatatgtctggctcttgctatggattcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cctctgacctcctttctctctcttctggaacctatatgtctggctcttgctatggattcc 315
Query: 241 cgccactctttttttttaactaccattgtagatctgacctgtgctctgtt 290
||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 314 tgccactctttttttt-aactaccattgtagatctgacctgtgctctgtt 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 689
Length adjustment: 9
Effective length of query: 281
Effective length of database: 680
Effective search space: 191080
Effective search space used: 191080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
