BAC Information

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BAC

Clone NameMSMg01-312P07
Chromosome3 (Build37)
Map Location 148,111,647 - 148,276,011
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100040354, Lphn2, LOC100040368, LOC668893, EG381483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312P07.T7 (MSMg01no312_p07.b1)MSMg01-312P07.TJ (MSMg01no312_p07.g1)
ACCAG435027AG435028
length743745
length of high quality
(start - end)
316 (39 - 354)188 (128 - 315)
definitionCHROMAT_FILE: MSMg01no312_p07.b1 PHD_FILE: MSMg01no312_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:09 2005CHROMAT_FILE: MSMg01no312_p07.g1 PHD_FILE: MSMg01no312_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,111,647 - 148,111,958)(148,275,825 - 148,276,011)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
AGTGTATACATGCTGCAGTTCACCACACACAATGGGTCCCCTTGTCCATT
AAGTATAGACTATGGCCCTCAAGCCTATGAAGAATGACAGGCATATCTTC
TGTCTGGACAATTCTAGAAACTTCCAGCCATCCTGGATTCTCCAGCTGAC
TATCTCAGACTGTGGCTGGGAGATGAGCTAAGTCATTTAAAGTTTCAGAG
TTATGACACTCCATATCTAAAGTGGGATAATTAAACAGACTTTAAAGATG
TTCAGATGAAAGGCGTGATGTAAAAAGAAAATAATCTGCAGATCATTAGG
AAGATTTTTTTTAATCCACTCCCCACCCCGGAGTGGTTAGGCAAAGCTTG
GTCAAAGGACCCACCCACTCAAAAAAAATATAATTTTTATAAGTACAGGA
AGCTAATTATTCTTTATACTGCCACAAGTCTGTATGCCGGCTCCCTCACA
AGACTGCGATAGCTCTGTCTCAGAAGAATGTCTAACTGTGTGCTTTGTTT
TTCCCACACGACTTTTAATATCAGAGTTTAATAACTATTATTTGAGTGCT
TATAATGTACTTCTTATTATAGAGAAATGAATAATTTCCTTTGTTGCAAC
ATGCTGTCTGTTTTTTGCTGTTTTTCTCTGATGTTCCCTGTCCACCAAGC
ACCCTATCATCCCTTTCCCTTTCATCCATTTGCGATTCCTAAC
ACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGTATCAGCTCCTTTTGTTTATTTACACAT
AGACACAACCTTTTTACCAATGAGAAATTGATCAGGAATATGGGGTTTGC
TCTGGTCTTTGTTTGACGGCAAGCCTGCACATGTCTGCTCTTGTAAAATT
ATACAAGTGACCTCACTAGTTCAATGTATGAGTGCTAAGAGCAATTAAAT
GCCAGGCAGGGCTTGGGCACATCTGCACAGCTCCAGCTCCTATCATGCCT
TGTTAGACAATTGTTTTTTATTAAGTGAACTCCACGCATAGCATCATGAC
CATATAGCGTAAATTACCGGNCCGNACCCCTTTGCCTAAATTAAATATAC
GCGTAAGCGCCCCCCCAAAAATTGTAGCGAAAAAATTGCTGCTGAAACTG
GATATGGATGGTTAATTGAAAGCAGGAAGTTCCTTGAGGAAATAAAATGT
CATGGTAGATATTACAAATCCTATGAAGGCCAGATGATTCAATTGATATA
CTCACTCCCAAATGCATGGCATTCGACCCAATGTCCCTATTGTGTTTTTC
ACATTAAATTCTGCCAAGTCCACTTCTCTGTGAATGTTAACCATTTTTTG
CATTTTTGAATATACCTGTTCTCCACATAAATAATACCCTTCTGCTTCTT
GCGAATGCTATTCTGAACCATTTTACCCCTTCTTGTAAAAGTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_p07.b1 MSMg01no312_p07.b1 CHROMAT_FILE:
MSMg01no312_p07.b1 PHD_FILE: MSMg01no312_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:09 2005
         (316 letters)



>mm_chr3_148111443_148112158
          Length = 716

 Score =  557 bits (288), Expect = e-163
 Identities = 306/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagagtgtatacatgctgcagttcaccacacacaatgggtccccttgtccattaa 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagagtgtatacacgctgcagttcaccacacacaatgggtccccttgtccattaa 264

                                                                       
Query: 65  gtatagactatggccctcaagcctatgaagaatgacaggcatatcttctgtctggacaat 124
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtatagactatggggttcaagcctatgaagaatgacaggcatatcttctgtctggacaat 324

                                                                       
Query: 125 tctagaaacttccagccatcctggattctccagctgactatctcagactgtggctgggag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctagaaacttccagccatcctggattctccagctgactatctcagactgtggctgggag 384

                                                                       
Query: 185 atgagctaagtcatttaaagtttcagagttatgacactccatatctaaagtgggataatt 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 atgagctaagtcatttaaagtttcagagttgtgacactccatatctaaagtgggataatt 444

                                                                       
Query: 245 aaacagactttaaagatgttcagatgaaaggcgtgatgtaaaaagaaaataatctgcaga 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 aaacagactttaaagatgttcagatgaaaggcatgatgtaaaaagaaaataatctgcaga 504

                       
Query: 305 tcattaggaaga 316
           ||||||||||||
Sbjct: 505 tcattaggaaga 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no312_p07.g1 MSMg01no312_p07.g1 CHROMAT_FILE:
MSMg01no312_p07.g1 PHD_FILE: MSMg01no312_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:09 2005
         (188 letters)



>mm_chr3_148275625_148276212
          Length = 588

 Score =  362 bits (187), Expect = e-105
 Identities = 187/187 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgatcaggaatatggggtttgctctggtctttgtttgacggcaagcctgcacatgtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttgatcaggaatatggggtttgctctggtctttgtttgacggcaagcctgcacatgtctg 328

                                                                       
Query: 61  ctcttgtaaaattatacaagtgacctcactagttcaatgtatgagtgctaagagcaatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctcttgtaaaattatacaagtgacctcactagttcaatgtatgagtgctaagagcaatta 268

                                                                       
Query: 121 aatgccaggcagggcttgggcacatctgcacagctccagctcctatcatgccttgttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aatgccaggcagggcttgggcacatctgcacagctccagctcctatcatgccttgttaga 208

                  
Query: 181 caattgt 187
           |||||||
Sbjct: 207 caattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space:   104400
Effective search space used:   104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)