BAC Information

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BAC

Clone NameMSMg01-312P12
Chromosome3 (Build37)
Map Location 37,914,334 - 37,914,650
singlet/doubletsinglet
Overlap genenone
Upstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811
Downstream geneEG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312P12.T7 (MSMg01no312_p12.b1)MSMg01-312P12.TJ (MSMg01no312_p12.g1)
ACCAG435037AG435038
length741740
length of high quality
(start - end)
321 (40 - 360)289 (68 - 356)
definitionCHROMAT_FILE: MSMg01no312_p12.b1 PHD_FILE: MSMg01no312_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:10 2005CHROMAT_FILE: MSMg01no312_p12.g1 PHD_FILE: MSMg01no312_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AAGCAAAGGTTAGGAAGAAATTCCATATCCTCTCTGGCCATGCTGAGAAA
ACACTAAGCAGGTGCAAGCTATTAGAAAAAGAAAAAAAAATGTAGACATT
ATTAAATTCGGGAGGTGGATAAATTAAAGCCAGTATGATTATCATCATTA
TGTCCTGTTCCAAAATCAAAACAAAAACGGTTGTGAACATCACACCCATA
CCACTGTTGTTTCAAGCAGAAACCATTTTTAGTCAATGCAGGTTAAAAAT
AGCAAGTATGGTTATCCTTTCCTTAGAGGAGAATAACTCCAGCTGTGTCC
ATCTTTACTTTGTTAGCTCCCCCCCCCCCCCGCAAAACCAGTTCTGCCCC
AATCTGCAAGACAGCCCGCGAAAGAATAAAAAAAGTGTTTAGTGCTGAGC
CTGTACATACAATGGTTCCTCAAAGCAGGGCCAGTGGTACACTCACACCA
CACTTTCCCACTGCCCATTGTCACATAGGGAACATAATACCTTTCTGACT
CAGAATGCATAAGATTTTTGGAGAAACAGTTAAAATCCAGATAGTCGCTC
TGTATAATCTTTTTGCACATATAAAAACATTGTGTCCGTTATTGTTCTCT
TCCATGTGACCCAATATCTGACGGATTTAGAAGGTTTTTTGCTCATTATT
CCTTTCAGCTTTCCAGCGCACTATTCAATTTTTGACGCCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTAGATCTCAGCCCCATTTTTTAATGGG
GTTATTTGATTTTCTGCCATCCACCTTCTTGAGTTCTTTATATATATTGG
ATATTAGTCCCCTATCCGATTTGAGATAGGTAAAGATCCTTTCCCAATCT
GTTGGTGGCCTTTTTGTCTTATTGACGGTGTCTTATGCCTTGCAGAAGCT
TTGCAGTTTCATGACGTCCCATTTGTCAATTCTAGGTCTTACAGCACAAG
CCATTGCTGTTTTTTTCAGGAATTTTTCCCCTGTGCCCATATCTTTGAGG
CTTTTTTTTATTTTCTCCTCCCCCCCCCTAAGTGTCTCTGGTTTTATGTA
GAGCTCCTTGACCCACTTAAATAAAAACTAAGTACAAGGAGATAGGAACG
GATCTCTTCCCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAT
TTGTTGAAAATGCTGTCTTTTTTCCACTGTATGGTTTTAGCTCCCTTGTT
GAAGATCAAGTGACCATAGGCGTGTGGGTTCATTTCTGGGTCTTCAATTC
TATTCCTTTGGCCTACTTGTCTGTCTCTATACCAGTACCATGCAATTTTT
TTTTTTTTTATCCCAATTGGTTCTGCAGTACAGTTTTAGTTCCAGGTTGC
GTGATTTTCACCAGAGGTTTCTTTTATCCTTGTAGGTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_p12.b1 MSMg01no312_p12.b1 CHROMAT_FILE:
MSMg01no312_p12.b1 PHD_FILE: MSMg01no312_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:10 2005
         (321 letters)



>mm_chr3_37914130_37914851
          Length = 722

 Score =  605 bits (313), Expect = e-178
 Identities = 316/317 (99%), Gaps = 1/317 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaagcaaaggttaggaagaaattc-catatcctctctggccatgctgagaaaac 63
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 521 gaattcaaagcaaaggttaggaagaaattcacatatcctctctggccatgctgagaaaac 462

                                                                       
Query: 64  actaagcaggtgcaagctattagaaaaagaaaaaaaaatgtagacattattaaattcggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 actaagcaggtgcaagctattagaaaaagaaaaaaaaatgtagacattattaaattcggg 402

                                                                       
Query: 124 aggtggataaattaaagccagtatgattatcatcattatgtcctgttccaaaatcaaaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aggtggataaattaaagccagtatgattatcatcattatgtcctgttccaaaatcaaaac 342

                                                                       
Query: 184 aaaaacggttgtgaacatcacacccataccactgttgtttcaagcagaaaccatttttag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaaaacggttgtgaacatcacacccataccactgttgtttcaagcagaaaccatttttag 282

                                                                       
Query: 244 tcaatgcaggttaaaaatagcaagtatggttatcctttccttagaggagaataactccag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tcaatgcaggttaaaaatagcaagtatggttatcctttccttagaggagaataactccag 222

                            
Query: 304 ctgtgtccatctttact 320
           |||||||||||||||||
Sbjct: 221 ctgtgtccatctttact 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 722
Length adjustment: 9
Effective length of query: 312
Effective length of database: 713
Effective search space:   222456
Effective search space used:   222456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)