BAC Information

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BAC

Clone NameMSMg01-313B08
Chromosome3 (Build37)
Map Location 71,512,084 - 71,512,502
singlet/doubletsinglet
Overlap genenone
Upstream geneEG625901, EG667377
Downstream geneLOC667385, LOC100041459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313B08.T7 (MSMg01no313_b08.b1)MSMg01-313B08.TJ (MSMg01no313_b08.g1)
ACCAG435116AG435117
length1,2241,271
length of high quality
(start - end)
407 (44 - 450)318 (134 - 451)
definitionCHROMAT_FILE: MSMg01no313_b08.b1 PHD_FILE: MSMg01no313_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:23 2005CHROMAT_FILE: MSMg01no313_b08.g1 PHD_FILE: MSMg01no313_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:54:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCATCACTGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATAGGCACACTCCTAACAGAGTATGAACAACTGATGAAATACTTTCA
AATAAATCAAAATTATTCTATTCACACCCTATCCCCATGGATAACTGACA
CCATCAAAATTCTACTTGAGCAATGCCACTGAAATTCAATTTGATATTGA
GTAAGAAGTGTGGATGCCAAAAAATCATGAAACATTTATGGACATTGCCT
CTTTGGTTCCTCATTTCCTACTTCCCTCCAATTCATTCATACAACTCTGC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTGTCTCTCTCCCTCTCTTTCTCTCTCTTTCTGTAGCATAAATAATAAT
ATATGAATAAGCAAATTAATAAAACATAATACACAAGCAAGAGACTAGTA
TTTTTTTACCCCCCCCACAAAAATATCCACAAAAACACAAAAAGAGCTTG
TTGTTTTTTTTGTTGTTGTTGTTGGCCATGTACTACCACACAGAGGCTCT
GCCTTTATCTGGGTGTTTTATACACCCAGAGACTTTTAACTTTTAGTTTG
TGTCCACTTGCTCCTCTCCATAATGGATCACTCTCCAGCTTGAACCTGTG
TGTGCTGCTACAGTTTTTGTGGCATCACTTGTGATTCAGAGAGAAGACAC
TGATTCCTTAGTGTCATCCATCTCCTCTGAATCTTATAATCTTCCCATCT
TCTCTTATTTATGTTTCCTGAACCATTAGGAGAAGGATTTAAAGAAGAGA
TTTCATTTAAGACTGAGTCATCCAATGTCTTTCACTCTCGGCAAGCTATA
AAGTTTTTGGTTCTCCGTGATAGTTCCCATCTTCTTGAAGACAGAGCTTC
TTTGACTATGGCTGAGTAAGACAGCAGTATTTGGGTATTAAATGCCTATT
TTTTTCTAATTCTGTTTCAAATGCTTACCTAAAGCTCCGTCTTAATTGCA
ACCAAATAAAGTCCTATGGGCTCTTAAAATGCCCTTCCTCCAATGATACA
AGGATAAAAAGGCTTGAATTTTATACATTTGCTCTGGGCCTTTCAAATTC
CCCTCTCTCACTAGCAACCTATTACCCACCCCCCCCTCTATAAAACTTAT
CTACTATTTTTTCCTTTTCCAAACCCCCACATTTCTATTCTCTCTACGCT
TCTTCTCCCTGTCCCTCACACTAC
NNNCCGCAGACGGNAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAG
AAACACCTGAAAAAATGTTCGGCATCCCTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCGACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGAATTGCAAGCTTGTATAACCACTCTGGAAATC
AGTCTGGCAGTTCCTCAGAAAATTAGACATAGTACTACCGGAGGATCCTG
CAATACCACTCCTGGGCATATATCCAGATATTCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTCATAATAGCCAGAAGCTG
TTTTTTTTCCCCCCCCCCCTCAACAGAACACTGCCCACAAAAAAAGAGGG
GGGTTTACNCNGTAGAGTACTACTCAGCTATTAAAAGGAACGAATTTATG
AAATTCCTAGGCAAAAGGATGGGTCTGGAGGGCATCATCCTGAGTGAGGT
AACCCAATCACAAAATAACTCACATGATATGTACTCACTGATAAGTAGAT
ATTAGCCCAGAAACTTAGAATACCCAAGATATAAGATACCATTTGCAAAG
CACATGAAACTCCAGAAGAACGAAGACCAAAGTGTGGATACATTGCCTCT
TCTTAGACTTGGGAACAAATCTCTCCTGGAAGGAGTTACAGACACAAATT
TTGTAGCTGAGACGACAGAATGGACCATCTAGAGACTGCCCTACCCGCGG
ATCCCTCCCATAATCCGCCTCCCAATGCTGACCCCATTGCTACCCCTAGA
AAAATTTGCCGAAGGCACCCATATATACCTCTCTCCTGCGACACCATCCC
CGCCCCAACCAAACCCAAACTCCCTCGAACCCCCCCTCCTATTTCATTCT
CCTCACCCCCCCCCTTGCATCTCTTCTCATACCCCCCCCTCCCCCCCCTG
CGTTTCCTCCCTCCCACTCTCTTTCCTTCTTCCCTCCTCCCCCTTCTTGC
ACCTCCCCCCTTCCCCTTCTTCCCTCTCTCTCACTCTCTACACACTCTTC
ACCTTCTCTACCTCCCCCCCTATATACCCCACTCCCTCACCCCTCACCCT
CCTACCCTTCTCTTTCCTTCTCATCCCATCCCTCTCTACCTCCTCCTCAC
CCTCTCTTTCTCCACTCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_b08.b1 MSMg01no313_b08.b1 CHROMAT_FILE:
MSMg01no313_b08.b1 PHD_FILE: MSMg01no313_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:54:23 2005
         (407 letters)



>mm_chr3_71512047_71512853
          Length = 807

 Score =  717 bits (371), Expect = 0.0
 Identities = 400/419 (95%), Gaps = 16/419 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataggcacactcctaacagagtatgaacaactgatgaaatactttcaaataaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaattcataggcacactcctaacagagtatgaacaactgatgaaatactttcaaataaat 397

                                                                       
Query: 65  caaaattattctattcacaccctatccccatggataactgacaccatcaaaattctactt 124
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 396 caaaattattctattcacacactatccccatggataactgacaccatcaaaattctactt 337

                                                                       
Query: 125 gagcaatgccactgaaattcaatttgatattgagtaagaagtgtggatgccaaaaaatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gagcaatgccactgaaattcaatttgatattgagtaagaagtgtggatgccaaaaaatca 277

                                                                       
Query: 185 tgaaacatttatggacattgcctctttggttcctcatttcctacttccctccaattcatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgaaacatttatggacattgcctctttggttcctcatttcctacttccctccaattcatt 217

                                                                       
Query: 245 catacaactctgctct------ctctctctctctctctctctctctctctctctctctct 298
           ||||||||||||||||      ||||||||||||||||||||||||||||||||||||||
Sbjct: 216 catacaactctgctctctctcgctctctctctctctctctctctctctctctctctctct 157

                                                                       
Query: 299 ctctctctct----------ctgtctctctccctctctttctctctctttctgtagcata 348
           ||||||||||          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ctctctctctgtctctgtctctgtctctctccctctctttctctctctttctgtagcata 97

                                                                      
Query: 349 aataataatatatgaataagcaaattaataaaacataatacacaagcaagagactagta 407
           |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 96  aataataatagatgaataagcaaattaataaaacataatatacaagcaagagactagta 38


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)