Query= MSMg01no313_g11.b1 MSMg01no313_g11.b1 CHROMAT_FILE:
MSMg01no313_g11.b1 PHD_FILE: MSMg01no313_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:03 2005
(411 letters)
>mm_chr3_132631407_132632220
Length = 814
Score = 644 bits (333), Expect = 0.0
Identities = 391/413 (94%), Gaps = 9/413 (2%)
Strand = Plus / Plus
Query: 5 gaattctgatgactgttttgtctgcagaacagtttgtgcttgctacataatttt-actaa 63
||||||||||||||||||||||||||||||||||||| ||||||| || |||| |||||
Sbjct: 205 gaattctgatgactgttttgtctgcagaacagtttgtacttgcta--ta-ttttcactaa 261
Query: 64 tcccagctgcaagagggcccggatttatgtggtttctcctgttatactgtacataggaaa 123
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcccagctgcaagaaggtatggatttatgtggtttctcctgttatactgtacataggaaa 321
Query: 124 ttata---aaaaaggctaagtcaaatgtttaaaaatatattttagattagctgcacgttg 180
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 322 ttatataaaaaaaggctaagtcaaatgtttaaaaatatattttagattagctgtacgttg 381
Query: 181 gtcccatcatttagtatgatctagaattagacttcgatgactaacataacaggattagta 240
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 382 gtcctatcatttagtatgatctagaattagactttaatgactaacataacaggattagta 441
Query: 241 ggtattccaacctaagagcacattccttcctatgaggaattatagcatctttatcattag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggtattccaacctaagagcacattccttcctatgaggaattatagcatctttatcattag 501
Query: 301 catggatatgcctacaagtcaacacacacaggaagacatgtgtcttaataacttagtgat 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 catggatatgtctacaagtcaacacacacaggaagacatgtgtcttaataacttagtgat 561
Query: 361 tgaaaatgacagggtagtctttacaaattcagcacaacaaaag--ttgttgtt 411
||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 562 tgaaaatgacaaggtagtctttacaaattcatcacgacaaaagagttgttgtt 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 814
Length adjustment: 9
Effective length of query: 402
Effective length of database: 805
Effective search space: 323610
Effective search space used: 323610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no313_g11.g1 MSMg01no313_g11.g1 CHROMAT_FILE:
MSMg01no313_g11.g1 PHD_FILE: MSMg01no313_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:03 2005
(382 letters)
>mm_chr3_132807101_132807882
Length = 782
Score = 636 bits (329), Expect = 0.0
Identities = 362/377 (96%), Gaps = 8/377 (2%)
Strand = Plus / Minus
Query: 7 accaggcactgtgggagagattgggactacggagatgaacaggcacacattcagaactcg 66
||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 782 accaggcactgtgggagagattgggactacggagatgaacaggtatagattcagaactca 723
Query: 67 gactgcttagttttaatcccaataatatctataaatacaagtttctcgaacttgctactt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gactgcttagttttaatcccaataatatctataaatacaagtttctcgaacttgctactt 663
Query: 127 tagggcaaagactatgcctctgtcacaaagagattctcaaacacagcccagcacagcaca 186
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 662 tagggcaaagactatgcctctgtcacaaagagattctcaaacacagcacagcacagcaca 603
Query: 187 gcacagcccagcccagcatagcaaatggaacataacacagcaaataatgcagagggtacc 246
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gcacagcacagcccagcatagcaaatggaacataacacagcaaataatgcagagggtacc 543
Query: 247 agtcaaatcaccacttgttcatctctaataatgatccaagatgtgagcagatgggatctg 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 agtcaaatcaccacttgttcatctctaataatgatccaagatgtgagcagatgggatctg 483
Query: 307 cttcataaaaatcttccagga----atcttttttgccaaatgttgtgcattattttccat 362
||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 482 cttcataaaaatcttccaggaacccagc----ttgccaaatgttgtgcattattttccat 427
Query: 363 aaacatattgtcagcag 379
|||||||||||||||||
Sbjct: 426 aaacatattgtcagcag 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space: 288329
Effective search space used: 288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
