BAC Information

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BAC

Clone NameMSMg01-313P12
Chromosome3 (Build37)
Map Location 16,723,979 - 16,724,376
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313P12.T7 (MSMg01no313_p12.b1)MSMg01-313P12.TJ (MSMg01no313_p12.g1)
ACCAG435743AG435744
length1,2732,267
length of high quality
(start - end)
408 (44 - 451)---
definitionCHROMAT_FILE: MSMg01no313_p12.b1 PHD_FILE: MSMg01no313_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:17 2005CHROMAT_FILE: MSMg01no313_p12.g1 PHD_FILE: MSMg01no313_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGAGCACTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGACAGCCAGGACTACACAGGGAAACCCTGTCTTTAAAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGACCCAGAGAGAGAGAAGAAAAAGAAA
AAAAATAAGAAATAGGAGTGATACTCTATTTAAAAGACAGGAACTAAATC
CAGGAGTAGCATACGCAGAGGGAGAGCTTGAGCATGAAAAATGCAAGAAA
AATATTTTGGAAATGAGGGTGTGATTGTGTCTTCAGTGTGAAATGCAGCA
CTATATCTGTGTCCATCATGGTTTGGCCTGTAAACGCTTTTAACCTTTCT
TACTCCTCCAAATCCATCTTGATGCAGTCAAGACTGAGGTCAGGTAAGCC
TCCATTCTCATAACTCACACAGCGCTATGACTGAAAAGTCACAGAATTCC
TTTTTTTTTCTCCCCCCCCATTTCTATATTCTTCCCATCAAAAAAAAAGG
GGCAAACATTTTAAATTTTCCATCAGAATAATAATCCAGAAATAATTTGA
TGATAAGATGAGAATGAAGTTATAAGGAGACGAAGAGACAAAGAGATGAA
GGGATGAGGTGAAGGGAAATGAAGGTATGAAGTGTTTGAAAAGATGAGAA
AATGAAGGGATGATGATATGAAGGGAAAAGGTAATGATGTTTTTATTTTT
TATTATTATTTATTTTTATTATATTTTTATTTTTATTTTAAATNTTCATA
TTTTTTTTTATTAATTAATTTTTTTCCTATCTAATAGTATTTTATAAACT
TATTTTTTCTCCTCTTCCTTCCCACATCCTTTCTCCCCTCCTTTCTTTCT
CTCTCCTTTCTTCCTTTCTTCTTCTTCCTCTTTTTCACTTCATATCCTTT
CTTCCTCACTTCTCCACCCTCCCTTCTCTCTTCTTCCCTTCCTCTCTTCC
CCTCTTCTACCTCCTCCCTCTTCCACCCTTCNNCCNNNNNNNTTTCCTGC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNN
NTTTGGAGAGAGGGAAAATAAGGGGATNNTTNTTNTGGTGNTCGATTAAA
AATATTTAAGGGCAGGAAGAANTAATAGGGAAGGGGGATCGTGGGTGGGA
AAAATATTATGAGAGAGAAGTGAGAGTGGGTAAAATATATTGTGAGTGTG
GAGAGAGAGAATGAAGATAGTACTTTGAAGAGGAAGGAGTTTTTTAAACA
AAACAAGAAGGGAGTGAGAGGGGAGGGATAAATGTTATGTATGAGGGGGT
AAGTTAGAGGAAGTTGGTTGTGTAGATAGGAAATGAAAAAGATAAGAGGT
GTTTTTTAAGAGGAGGGGGAGGAGAGAATAGATGTTGAAAGGAGGGGGAA
TGTGGAGGAATAATGAAAAAGTAAGGGATGAGGGAGTGTAGGGATATGTT
GGTAAAATGAAAGAGGAAGTGATAGTAGAGTAGGAAGGTAGTAGGAGAGA
GAATGAAAGAGAGGAAGATAGGATATAAGTGGGATTTGGAAATATGAGAG
AGGGGAAGAGAAGAAAGAAATAAAATAAGTTTATATAGGGGGAAGGAAGT
AGAGTGACAAGAGATATAATTTGTGGATTAGATGTAAATAGAGAAGGAAA
TGATAGAAATAGAAAGATATATAGAAGAAATAAGGTGAGATAAATATTTG
AGGAGGGTAATGATAATAGAGAAAGGGAAGAATAGTATGAAGGGAATTAG
AGGAGAGAGAGGAGTTAGAAGATAGATGTTTTTTTTTATTTTTGTATAAA
TGAAGAAGAGAAAGAGAGAGAGTAGAGAAGAGGAATGTATTGAGGTAATG
TGTTAGTGATAAGGAAAAGAGGGAGAAAAATGATATGTTGTTTTTTTTTT
TTTTTATGAAGAGGGCGGCGCACACAGAGAAAAGAAGGGNGGAATGNGNN
NTTTTTTTTTTTTTTAAAAAAAAAAAAAGAGAAAGAGGAGGGGGGGGGGG
GGGTTTTCTTTTNTCTCTTTTTATTTAATTATGAGATGAATAGGAAATAA
TAAGAATGGAAAAAAATGTTATAGAAAGAGAAAGAAGGAGAAAATGAGGG
AAAGAGAGAGATATGTGAGAAAGAGAATGAAAAAATGGAAGAGGAAATAA
AATAAGGAGAGGTGAGGGGATGTGAAAGAAGGAGGAAGGGATAAAGATGA
GAGAGGGAAGAAGGAAATATGATAGAAAGTGAGTGATGGAAAGATAAATG
AAAATTGAGATAGAAGAGAAGGTAGTGTAGTAAAAACAATTGGGGATAAG
ATGATAAGAGGAAATGAATGAAAGAGTGGATGAATAGGGAAGTGTATAAA
GATTAAGAGGATGAGATAGGGGTGAGTGATGATGAAAGAATGGATAAGAA
TATGGGTATGATGTATGATATGAATGAGGATGGAAAGGTTGTATAAGAAA
AAGAGGGTTTGAGAGGAAATAGGAGTAAGGAAGTGATTAAAGAATGAGGA
AAAGATAAAGAGAATGAGAGTGAAGATGAGAGAAAAATATGAGAGAAAGT
GAGGGGAGGGAAAGAAGAAAGAGAAGAAAGGAGATAGATAGGAGGAGGTA
GAAAGTATGAAGGAAAAGAGAAGGTTGAAAAAGAGGGAAAAAAGGGAGAG
GGGATAAGATGGAATAGAGATAATGTGGTGGATATTAAGAAAAGAATAGA
GATGAAGTAGAGAGAGGATAAGAAGGAAAAGATAAGAATAAGGTATTGAA
GTGAATAGTAAGAGAGGATGTGAGAAGTGTAGTAAGAAGTGAAGAGGATA
TATGATAGATGTTAAATGAAGAAAAGAGTAATGGTGGTAATAAGATGGTT
GGAAAGATAGGAAATGAAAAATATGAAATGGGAGAAATAGGAGTGTGAGA
TAAGATGAGAGAGAAAAGAATGGATATGATAGAAGGAATGAAGATAGAAG
AGTAGTAATATGTGAAGGAATTAAATAAAGGAGAAAGAGAGAAGATAGAT
GGATGAAAGGTAGAGAATGATGATAGAGAGTAGAGAAGGTGAGAATGGTA
GGGAGAAATTGAGATAAGGAATGTGATAGAGGATGGTAGATAGTAGAGAG
GTGAGGTGAGATGAAAGAGTAATGTGAATGGGATAAGATGTGGAAGAAAT
AGAGTGAAAGAGGATGTAAGAGGGAAATGATGATGAAATGTATGAGTAGA
AGATTAGAAATGGTGAGAAGAATTTGTGGAGAAGAGTATAGAGAAATATG
AGAGAGAAGGTTGAAGGTGAGAGATTAGATGGGAAATAAGAGGAGAAAGA
GATAGGTATGGAGGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_p12.b1 MSMg01no313_p12.b1 CHROMAT_FILE:
MSMg01no313_p12.b1 PHD_FILE: MSMg01no313_p12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:17 2005
         (408 letters)



>mm_chr3_16723680_16724488
          Length = 809

 Score =  716 bits (370), Expect = 0.0
 Identities = 394/404 (97%), Gaps = 7/404 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggacagccaggactacacagggaaaccctgtctttaaagagagagagagaga 64
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 697 gaattccaggacagccaggactacacagggaaaccctgtctttaaaaagagagagagaga 638

                                                                       
Query: 65  gagagagagagagagagacccagagagagagaagaaaaag-aaaaaaaataagaaatagg 123
           |||||||||||||||||    |||||||||| || ||||| |||||||||||||||||||
Sbjct: 637 gagagagagagagagag----agagagagag-ag-aaaagaaaaaaaaataagaaatagg 584

                                                                       
Query: 124 agtgatactctatttaaaagacaggaactaaatccaggagtagcatacgcagagggagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agtgatactctatttaaaagacaggaactaaatccaggagtagcatacgcagagggagag 524

                                                                       
Query: 184 cttgagcatgaaaaatgcaagaaaaatattttggaaatgagggtgtgattgtgtcttcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cttgagcatgaaaaatgcaagaaaaatattttggaaatgagggtgtgattgtgtcttcag 464

                                                                       
Query: 244 tgtgaaatgcagcactatatctgtgtccatcatggtttggcctgtaaacgcttttaacct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgtgaaatgcagcactatatctgtgtccatcatggtttggcctgtaaacgcttttaacct 404

                                                                       
Query: 304 ttcttactcctccaaatccatcttgatgcagtcaagactgaggtcaggtaagcctccatt 363
           |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 403 ttcttactcctccagatccatcttgatgcagccaagactgaggtcaggtaagcctccatt 344

                                                       
Query: 364 ctcataactcacacagcgctatgactgaaaagtcacagaattcc 407
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctcataactcacacagcgctatgactgaaaagtcacagaattcc 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 809
Length adjustment: 9
Effective length of query: 399
Effective length of database: 800
Effective search space:   319200
Effective search space used:   319200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)